PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_25625_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 164aa MW: 19133.5 Da PI: 11.0138

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_25625_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	83.4	3.3e-26	2	69	27	103
EEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 27 sfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 sfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++i+r+ cra_locus_25625_iso_1_len_490_ver_3 2 SFVVWDPQNFAMNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQRHLLRTIRRR 66 8*************************************999.........******************** PP XXX CS HSF_DNA-bind 101 kse 103 k++ cra_locus_25625_iso_1_len_490_ver_3 67 KHT 69 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.9E-29	1	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.6E-22	2	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.5E-26	2	66	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.07E-23	2	66	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.0E-11	15	27	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	16	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-11	28	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
XSFVVWDPQN FAMNLLPRYF KHNNFSSFVR QLNTYGFRKV DPDKWEFANE GFLRGQRHLL 60 RTIRRRKHTT SSQVLPSGGG SSNSSSSSSR QGLESSCVEV GRFGLDEEVD RLRRDKQVLM 120 VELVKLRQQQ QHTKSYLKTM EQRLKGTEVK QQQMMTFLAK ALQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-16	2	71	45	125	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486569.1	1e-83	PREDICTED: heat stress transcription factor A-6b-like isoform X1
Swissprot	Q9LUH8	2e-71	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A1S4BCF0	3e-82	A0A1S4BCF0_TOBAC; heat stress transcription factor A-6b-like isoform X1
STRING	XP_009798078.1	2e-82	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113