PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_24992_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 436aa    MW: 47966.6 Da    PI: 8.4771
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_24992_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-195663799
                                          EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                                    B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                                           ++d sg+++e+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  ++ s++el+v+v+r+
  cra_locus_24992_iso_1_len_1555_ver_3  5 FVRDISGNVFEFRHIYRGTPRRHLLTTGWSKFVNAKKLVAGDSVVFM--RKiSNGELFVGVRRA 66
                                          689********************************************..5669********995 PP
2Auxin_resp79.39e-27115198183
                            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpv 72 
                                           a++ a+++++Fev Y+Pr ++++Fvv++e ve++++v + +G R+k ++etedss+ ++  Gtv ++s  d+ 
  cra_locus_24992_iso_1_len_1555_ver_3 115 AMEMAAKGMAFEVSYYPRPGWADFVVSAEIVERSMNVLWNAGVRVKKSMETEDSSRMTWsHGTVLSTSVPDNG 187
                                           5788999****************************************************9************* PP

                            Auxin_resp  73 rWpnSkWrsLk 83 
                                            W++S+Wr+L+
  cra_locus_24992_iso_1_len_1555_ver_3 188 PWRGSPWRMLQ 198
                                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.73167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-18475IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-14465No hitNo description
SuperFamilySSF1019362.22E-15565IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-16566IPR003340B3 DNA binding domain
PfamPF065073.3E-24115198IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
XAGLFVRDIS GNVFEFRHIY RGTPRRHLLT TGWSKFVNAK KLVAGDSVVF MRKISNGELF  60
VGVRRALKSS GGTTCRWNSC ITGASAVRLD QNGIDCGGDV PGFWRSAKGK PVLQAMEMAA  120
KGMAFEVSYY PRPGWADFVV SAEIVERSMN VLWNAGVRVK KSMETEDSSR MTWSHGTVLS  180
TSVPDNGPWR GSPWRMLQIK WDEHDLLKNV TRVSPWEVEY VVPTVSPHSA FLPIKKIKVL  240
QDPKMLPSEE EGSVLPIGGL SNSMMGHLGP LFQNYISPAS MQGARQNQFS FSSLSNIRSE  300
ITGPTSHTFI NNVMKSKLKT VSTELNIGSM QSENLSPDSQ SSVHYSGTEL AGKVGSNTPT  360
RIGVCSFQLF GKIIHMEEPV EDGVDYIGGC TEGESKKVCK EIDNPLDLSL TFPCSKLLDR  420
LDVQCQRTSG VEACPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-294219198388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091086.11e-169auxin response factor 17 isoform X1
TrEMBLA0A2L1GH291e-147A0A2L1GH29_9ROSA; Auxin response factor
TrEMBLA0A2R6Q1691e-147A0A2R6Q169_ACTCH; Auxin response factor
STRINGXP_008233939.11e-147(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924