PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2496_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 542aa    MW: 60504.1 Da    PI: 5.8743
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2496_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.1e-21108163156
                                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  cra_locus_2496_iso_1_len_2802_ver_3 108 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 163
                                          7999************************************************9877 PP
2START204.83.4e-642835093206
                                          HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHH CS
                                START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..........dsgealrasgvvdmvlallv 62 
                                           ++a++el k+a+a+ep+W +s     e++n+de++++f+ +++          +s+ea+r++g+v+ +l++lv
  cra_locus_2496_iso_1_len_2802_ver_3 283 VNQALDELKKMATAGEPLWIRSFetgrEILNYDEYMKEFPMDNSgnsagggrpkRSIEASRETGIVFVDLPRLV 356
                                          678999****************99***************999999***************************** PP

                                          HHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEE CS
                                START  63 eellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvi 125
                                          +++ d++ qW+e+++    ka+t+++i+ g      g lqlm+aelq+l+p+v  R+++fvRy++ql+a++w+i
  cra_locus_2496_iso_1_len_2802_ver_3 357 QSFTDVN-QWKEMFPcmisKAATVDTICMGegpnkdGLLQLMFAELQMLTPMVTtREVYFVRYSKQLNADQWAI 429
                                          *******.****************************************************************** PP

                                          EEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHH CS
                                START 126 vdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvat 199
                                          vd+S+d  ++   ++s+ +++++ Sg++i++ksngh+kvtwveh +++   +h+l+rs+v++g+a+ga++w at
  cra_locus_2496_iso_1_len_2802_ver_3 430 VDISIDKVEDTI-DASLNKCRKRASGCIIQDKSNGHCKVTWVEHLECQRGAVHSLYRSIVNNGVAFGARHWIAT 502
                                          **********87.9************************************************************ PP

                                          TXXXXXX CS
                                START 200 lqrqcek 206
                                          lq qce+
  cra_locus_2496_iso_1_len_2802_ver_3 503 LQLQCER 509
                                          *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.76E-2195166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-2395159IPR009057Homeodomain-like
PROSITE profilePS5007118.091105165IPR001356Homeobox domain
SMARTSM003893.2E-19107169IPR001356Homeobox domain
PfamPF000465.6E-19108163IPR001356Homeobox domain
CDDcd000865.46E-17112163No hitNo description
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PROSITE profilePS5084836.046272512IPR002913START domain
SuperFamilySSF559614.67E-30274509No hitNo description
CDDcd088751.89E-110276508No hitNo description
SMARTSM002343.8E-61281509IPR002913START domain
PfamPF018522.3E-50282509IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGLVDMSNPP PTKDLFPSPA LSLSLAGIFR SGAAAAAAAG NIEVEEGDEG SGGGRREDTT  60
AAAEISSENS GPIRSRSEDI DIYEGEGEHE HDDIDEDEDD QTNKKKKRKK YHRHTAEQIR  120
EMEALFKESP HPDEKQRQQL SKQLGLHPRQ VKFWFQNRRT QIKAIQERHE NALLKNELDK  180
LRDENKGLRE TIQKASCPSC GFATSNGKDT SMATEEQQLR IENSRLKAEV EKLRAAVIKF  240
TPSGTSPNNS SSSAGSDPDN SKSCLEFYTG IFGLEKSRVL EIVNQALDEL KKMATAGEPL  300
WIRSFETGRE ILNYDEYMKE FPMDNSGNSA GGGRPKRSIE ASRETGIVFV DLPRLVQSFT  360
DVNQWKEMFP CMISKAATVD TICMGEGPNK DGLLQLMFAE LQMLTPMVTT REVYFVRYSK  420
QLNADQWAIV DISIDKVEDT IDASLNKCRK RASGCIIQDK SNGHCKVTWV EHLECQRGAV  480
HSLYRSIVNN GVAFGARHWI ATLQLQCERL VFGMATNVPT KDSSGTIRVA SFFCFLVFNI  540
SV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108KKKKRK
2103109KKKKRKK
3105109KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027168169.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A068TPQ70.0A0A068TPQ7_COFCA; Uncharacterized protein
STRINGVIT_09s0002g04340.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]