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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2467_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 350aa MW: 37996.6 Da PI: 10.103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.4e-14 | 129 | 173 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky cra_locus_2467_iso_4_len_1379_ver_3 129 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 173 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.565 | 19 | 32 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 15.96 | 122 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-16 | 124 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-16 | 125 | 177 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-9 | 126 | 176 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-11 | 129 | 173 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-11 | 129 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.93E-9 | 129 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MSSSLERKKG KTVIMLRSCS QCGSNGHNSR TCGESSSAAG NGAGDGEFML FGVRVKVDPM 60 RKSVSMNDLS QYELPSNVNQ NGVDNSKNSN DSDKVVADDV VTAGAGYVSA DDAVQHQSTG 120 GRERKRGIPW TEEEHKLFLL GLQKVGKGDW RGISRNFVKT RTPTQVASHA QKYYLRKNNL 180 NRRRRRSSLF DITTDSVPGG LPMDDVKNHQ DKSVPKVLQH SQVPHAEKPN MNGYTIAPFP 240 LAVGPILLPV QVHNPMENKA FHWGDHQLQN GPGMLLRTVP FIPVANSSSA IRDLNLNQRV 300 EGEPSSPLSL KLSLSSSDNS QSSSTRHSTG FQAMAATSFS KGGDSIISVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125810.1 | 4e-95 | transcription factor MYB1R1 | ||||
Refseq | XP_027125812.1 | 4e-95 | transcription factor MYB1R1 | ||||
Refseq | XP_027169777.1 | 4e-95 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 4e-81 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A1DR86 | 0.0 | A1DR86_CATRO; MYB transcription factor | ||||
STRING | VIT_01s0026g01050.t01 | 4e-86 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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