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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2467_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 447aa MW: 49519.9 Da PI: 8.4715 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 226 | 270 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky cra_locus_2467_iso_2_len_1673_ver_3 226 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 270 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.565 | 19 | 32 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 13.306 | 219 | 275 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-8 | 223 | 273 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-15 | 225 | 276 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-15 | 225 | 274 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 4.85E-9 | 226 | 270 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-11 | 226 | 270 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-11 | 226 | 270 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MSSSLERKKG KTVIMLRSCS QCGSNGHNSR TCGESSSAAG NGAGDGEFML FGVRVKVDPM 60 RKSVSMNDLS QYELPSNVNQ NGVDNSKNSN DSDKVVADDV VTAGAGYVSA DDAVQHQSTG 120 GRELREVRSF YNFLLTYGFI DLLIFFNNSN LFFEIFELIP LSDWNLCQFV NFLKLICLLK 180 FSCXVLYIYS FDFGKSNSMQ RFCFEFLDLT VGFAHLSVDF LILGIPWTEE EHKLFLLGLQ 240 KVGKGDWRGI SRNFVKTRTP TQVASHAQKY YLRKNNLNRR RRRSSLFDIT TDSVPGGLPM 300 DDVKNHQDKS VPKVLQHSQV PHAEKPNMNG YTIAPFPLAV GPILLPVQVH NPMENKAFHW 360 GDHQLQNGPG MLLRTVPFIP VANSSSAIRD LNLNQRVEGE PSSPLSLKLS LSSSDNSQSS 420 STRHSTGFQA MAATSFSKGG DSIISVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023902305.1 | 7e-57 | transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 9e-46 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A1DR86 | 1e-132 | A1DR86_CATRO; MYB transcription factor | ||||
STRING | VIT_01s0026g01050.t01 | 3e-52 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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