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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2460_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 409aa MW: 46271.2 Da PI: 5.3357 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.9 | 6.4e-24 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e++snrqvt+skRr gilKKA+ELSvLCd+++ +++fs+tgk cra_locus_2460_iso_7_len_2361_ver_3 10 RLESSSNRQVTYSKRRSGILKKAKELSVLCDIDIVLLMFSPTGK 53 679***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.567 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-27 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-21 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MGRVKLKIRR LESSSNRQVT YSKRRSGILK KAKELSVLCD IDIVLLMFSP TGKPTIFRGA 60 RSNIDEIISK FAQLSPQERA KRKLESLEVL RKTFKKLDHD INIQEYLDAS SPSLEELCSQ 120 ARVLQAQLTE VHKKLSWWSN PEKIEDIDHL RQMENSLRES LNRLREYKFQ NGMNLPVMMD 180 GDKERQPLTT WLASHDNQQL LLAEVPNLIS QGDIECARDQ SLPCCSVHYN TGQETELHNT 240 GRVDNVEFTQ NMSLPNCTGF FGTAKIGETT DIRSMDNLEC PSDPSLQSCS SLLYNGKEPE 300 IDNSSEMDKI TQESAAMDDL SAIACLRLQL GGQQAYYPFS TLTVPEVKKL DVGKEMNFQD 360 NSMSYQIQGN FEVPSSMYGN VQHAWNHPAD ACASNMIDGN SYPQPPDHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125662.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
TrEMBL | A0A068UUT5 | 0.0 | A0A068UUT5_COFCA; Uncharacterized protein |