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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_24253_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 31504.2 Da PI: 5.6488 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.1e-05 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F+++ L +H H cra_locus_24253_iso_3_len_939_ver_3 142 FQCEICRKIFTSSQALGSHKTIH 164 89*****************9887 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00032 | 183 | 205 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cgk+F + L H r+H cra_locus_24253_iso_3_len_939_ver_3 183 HECPFCGKVFGSGQALGGHKRSH 205 79**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 140 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.35E-9 | 140 | 205 | No hit | No description |
Pfam | PF13912 | 1.0E-4 | 142 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.201 | 142 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 180 | 205 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-11 | 182 | 205 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 183 | 205 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 183 | 205 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 185 | 205 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
TSSEHFEEED DEDEAEEEAK LGVYGLRENP KKSFRLADPE FLDVSGGSVI VLQDRESETE 60 STRKPTRRRS KRTRKMFVAK IDDELELQNK KEKKMVIKPN STHESLVSSV SSDTNNSPEE 120 DLALCLIMLS RDVWSTKICR KFQCEICRKI FTSSQALGSH KTIHKKIIKN CPENNNNGDE 180 KVHECPFCGK VFGSGQALGG HKRSHFLTSS TTTTTTTTAP APAPALPPFL ASASSSSKLH 240 EGLMIDLNLP APMEENQEED EFCFQEGSAV SDANFINPIK HGQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253013.1 | 1e-66 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1J6IGJ4 | 3e-65 | A0A1J6IGJ4_NICAT; Zinc finger protein zat4 | ||||
STRING | XP_010258927.1 | 5e-61 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |