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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2389_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 311aa MW: 34943.9 Da PI: 8.325 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.4 | 2.6e-31 | 95 | 150 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhAa+ G h+vDGCgEfmps geegt++al+CaAC+CHRnFHRre e+ cra_locus_2389_iso_1_len_1402_ver_3 95 SIRYRECLKNHAANKGRHVVDGCGEFMPS-GEEGTPEALRCAACDCHRNFHRREREN 150 789*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 95 | 149 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.0E-30 | 96 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-29 | 97 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.854 | 98 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.69E-18 | 239 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-27 | 243 | 309 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.681 | 245 | 309 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 3.4E-27 | 247 | 304 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MELREEQKKE NIPNSITYHP SSSLYHESSA EAEAEAASAS AAAASILPES RRRNHEPVVL 60 GRPGQTLDQP HLIHHHPDPD PAPAAASGTI TNNTSIRYRE CLKNHAANKG RHVVDGCGEF 120 MPSGEEGTPE ALRCAACDCH RNFHRREREN DYQAIATTSR HGSVLFPPHS HHQPFTMLPQ 180 AQQHRQHKYS FTNSPTAPIM MTFGGGSSGG GGGPAESSSE DLNIFHCETA QGVVANFNYN 240 QSFSVSKKRI RTKFTQLQKE KMHEFAEKLG WKIQKQNEEE VQQFCHEFGV KRQVFKVWMH 300 NNKQAMKRKQ M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-20 | 246 | 305 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804697.1 | 1e-93 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 2e-63 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A1U7YKV1 | 2e-92 | A0A1U7YKV1_NICSY; zinc-finger homeodomain protein 6 | ||||
STRING | XP_009804697.1 | 4e-93 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |