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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23708_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 498aa MW: 54779.9 Da PI: 5.5333 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 322.7 | 7.4e-99 | 102 | 492 | 1 | 374 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvs.el..ykalpps 67 lv+lL+++Aea++ ++ ela+ +L rl+el + +dg++m+Rlaayf+eAL+ l + + ++ +k l + cra_locus_23708_iso_1_len_1956_ver_3 102 LVHLLMAAAEALTGinKSRELARVILVRLKELvCPNDGTNMERLAAYFAEALQGLLDGVGVgGVngSKRLLTV 174 68***********84355569***********555566*****************988433122113333333 PP GRAS 68 etsekn.......sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133 ++++ + +aa++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qa+ cra_locus_23708_iso_1_len_1956_ver_3 175 GFHNYKddddhpqADVLAAAFQLLQDMSPYVKFGHFTANQAILEAVGHDRRVHIVDYDIMEGIQWASLMQAMV 247 3333333456676777778899*************************************************** PP GRAS 134 sRp....egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 sR+ ++p+lRiT++++ s +++etg+rLa fA+++g pf+f+ ++ e+++ ++L++ + cra_locus_23708_iso_1_len_1956_ver_3 248 SRNkdggPPTPHLRITALSRGGGAnsrrSFGTIQETGRRLAAFAASIGQPFSFHHCGLDSDETFRSSSLKLVR 320 ***77433366*******98443366678899***********************9999************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfds 270 gEal+ n++l+l ++ + ++ + ++L+ k+l+P+++++ve+ea +++ F+++f+++l++ysa++ds cra_locus_23708_iso_1_len_1956_ver_3 321 GEALIMNCMLHLPHFSYR---APDSIASFLSEAKTLNPRLITLVEEEAGPtGDGGFVAKFMDSLHHYSAVYDS 390 *************99844...4444569*******************9988********************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 lea++p + ++r+ vEr++lg++i va ++r e +W e+l+++GF+p +s + +qaklll cra_locus_23708_iso_1_len_1956_ver_3 391 LEAGFPMQGRARALVERVFLGPRIAATVARIYRARGEVDG--CSWGEWLSRMGFHPNGISFANHCQAKLLLGL 461 *********************************9776655..89***************************** PP GRAS 344 vksdgyrveee.sgslvlgWkdrpLvsvSaWr 374 ++ dgyrvee s+ lvlgWk+r+L+s+S+W+ cra_locus_23708_iso_1_len_1956_ver_3 462 FN-DGYRVEELaSNKLVLGWKSRRLLSASVWT 492 **.******876999****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.797 | 76 | 472 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-96 | 102 | 492 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MAMLMKNTLV DLDFPCYSTT TTTTTSTEDD HCCDWSDWSP VVDWDELSGD NNDFHDLIDS 60 MMGDNAVLYH PDSRSSSAIS PESVIMDIED NSSLEDLKGL RLVHLLMAAA EALTGINKSR 120 ELARVILVRL KELVCPNDGT NMERLAAYFA EALQGLLDGV GVGGVNGSKR LLTVGFHNYK 180 DDDDHPQADV LAAAFQLLQD MSPYVKFGHF TANQAILEAV GHDRRVHIVD YDIMEGIQWA 240 SLMQAMVSRN KDGGPPTPHL RITALSRGGG ANSRRSFGTI QETGRRLAAF AASIGQPFSF 300 HHCGLDSDET FRSSSLKLVR GEALIMNCML HLPHFSYRAP DSIASFLSEA KTLNPRLITL 360 VEEEAGPTGD GGFVAKFMDS LHHYSAVYDS LEAGFPMQGR ARALVERVFL GPRIAATVAR 420 IYRARGEVDG CSWGEWLSRM GFHPNGISFA NHCQAKLLLG LFNDGYRVEE LASNKLVLGW 480 KSRRLLSASV WTSLNSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-53 | 95 | 492 | 11 | 378 | Protein SCARECROW |
5b3h_D | 4e-53 | 95 | 492 | 11 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093922.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
Swissprot | Q5NE24 | 0.0 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A2K2AI35 | 0.0 | A0A2K2AI35_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12241 | 19 | 23 |
Publications ? help Back to Top | |||
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