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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23496_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 27247.7 Da PI: 9.4398 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.8 | 8e-44 | 42 | 175 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkky 68 +pGfrF Pt+eelv++yL+kk+e++ + l++vi+ ++iy++ePw Lpk +++++++w+fF++r++++ cra_locus_23496_iso_1_len_726_ver_3 42 QPGFRFYPTEEELVSFYLRKKLEENIrepNLLDRVIPVIHIYEFEPWLLPKlsgeLCSGDSEQWFFFVPRQERE 115 69********************9987664444567***************656653444677************ PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 a+g r+nr+t+sgyWkatg+ + v+s++++++g+kk++vfy+g+ap+g+kt+W m+eyr+ cra_locus_23496_iso_1_len_726_ver_3 116 ARGGRPNRTTASGYWKATGSPNYVYSSNNRVIGVKKSMVFYRGKAPTGKKTTWKMNEYRA 175 **********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-48 | 38 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.684 | 41 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-25 | 43 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
XAGGLKAREN NIHTNQFAYI DFMDMQQQED QKQKEIKLVE FQPGFRFYPT EEELVSFYLR 60 KKLEENIREP NLLDRVIPVI HIYEFEPWLL PKLSGELCSG DSEQWFFFVP RQEREARGGR 120 PNRTTASGYW KATGSPNYVY SSNNRVIGVK KSMVFYRGKA PTGKKTTWKM NEYRAIEEQI 180 LPSSSSAQPI PKLRHELSLC RVYIISGSCR AFDRRPLWTE TRRLGEIAQD FSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-35 | 31 | 203 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-35 | 31 | 203 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-35 | 31 | 203 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-35 | 31 | 203 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swm_B | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swm_C | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swm_D | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swp_A | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swp_B | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swp_C | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
3swp_D | 8e-35 | 31 | 203 | 10 | 166 | NAC domain-containing protein 19 |
4dul_A | 8e-35 | 31 | 203 | 7 | 163 | NAC domain-containing protein 19 |
4dul_B | 8e-35 | 31 | 203 | 7 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083422.1 | 2e-97 | NAC domain-containing protein 90-like | ||||
Refseq | XP_027184824.1 | 2e-97 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 9e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A068UEA7 | 6e-94 | A0A068UEA7_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A1U7VCH0 | 5e-94 | A0A1U7VCH0_NICSY; NAC domain-containing protein 90 | ||||
TrEMBL | Q9SXQ0 | 5e-94 | Q9SXQ0_TOBAC; NAC domain-containing protein 90 | ||||
STRING | XP_009759500.1 | 9e-95 | (Nicotiana sylvestris) | ||||
STRING | PGSC0003DMT400067707 | 2e-94 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Publications ? help Back to Top | |||
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