PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23486_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CO-like

Protein Properties

Length: 872aa MW: 96891 Da PI: 8.3948

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23486_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.8e-07	35	79	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++++++++ C +++ lC+dC H + H++ p cra_locus_23486_iso_4_len_2695_ver_3 35 SQICDNCGSEPVSVRCATDNLVLCQDCDWDAHGScsvsaaHDRNP 79 579*************************99994477888887766 PP
2	CCT	62.4	1.4e-21	418	461	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ cra_locus_23486_iso_4_len_2695_ver_3 418 RGNAMKRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 461 7789**************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.049	1	37	IPR000315	B-box-type zinc finger
CDD	cd00021	7.57E-4	5	25	No hit	No description
PROSITE profile	PS50119	9.826	33	80	IPR000315	B-box-type zinc finger
CDD	cd00021	2.38E-7	37	66	No hit	No description
SMART	SM00336	0.97	38	80	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.813	418	460	IPR010402	CCT domain
Pfam	PF06203	1.3E-15	418	460	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
QFAILYCRAD SAKLCLLCDQ HVHSANALSR KHLRSQICDN CGSEPVSVRC ATDNLVLCQD 60 CDWDAHGSCS VSAAHDRNPV EGFSGCPSAI ELASIWGLEI EDKKPEVPIN DEPNWAGEFL 120 DSWIGGKEVS PSVLLHELIV PNHHNPSAFY SNCGGEMMKK QNPRCGKQRQ VIMKQLLGLL 180 ERDLVDGGGG SSGGGGGSDE LGPGTPNESG AGLWPGTDEA CGLGDGSEGA ACISNQQFHQ 240 QQNAPFMSLL MMQTPANLKE KDRMAEGNML WNRNPSDQAT QIWDFNLGQL RAHDESDPLE 300 YTACDVGYVM RSYGELLKEA SLGTTKGAEI SGFNCSIVHE DMVGFNNSNN PSASQGPATS 360 ESNNLAVGTA TSGSGIGKGK CYGGLKDFQL MNHNVLVKTE AVTAEITKAD MELLAKNRGN 420 AMKRYKEKKK TRRYDKHIRY ESRKARADTR KRVKGRFVKA NDAADGXMVS AGDXNNFTSN 480 AGCVPSRPSI IAVQMRYYIH LEQEPYSCRG LLLDVMFKTC VGESFICSTN KXMXLSLFKF 540 TSLVGILVKK PLFFFHVIAS KPSNKMVTHR SQIDFVHAMC FLTYDLAATL LGFRLLHLFL 600 RVLDHQAPXR KEKKMKDLSF FLLKNAFGAK MRKGFRNWCN GDDSTSTINR QRTEQGSAFA 660 IGSPPCLYAE TLRENQPTLE EMILQLELEE KAARRAKLDQ EYEEIRHRMS CVNSSDILRS 720 ARNALNQYPR FSLDGKDSMY RSSFQNNPTR LGKRFFPTTR QLPMPATIGG EDVVWCRPGI 780 VGKLMGLDAM PIPIGRYRRG LTAAMKRQQH LRRKKDKEDE IEKARLVVDW GGNDGVGGRR 840 GSCSRTGYCV MKPLRVDHLS DEDVGWPIRR FQ

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

QFAILYCRAD SAKLCLLCDQ HVHSANALSR KHLRSQICDN CGSEPVSVRC ATDNLVLCQD  60
CDWDAHGSCS VSAAHDRNPV EGFSGCPSAI ELASIWGLEI EDKKPEVPIN DEPNWAGEFL  120
DSWIGGKEVS PSVLLHELIV PNHHNPSAFY SNCGGEMMKK QNPRCGKQRQ VIMKQLLGLL  180
ERDLVDGGGG SSGGGGGSDE LGPGTPNESG AGLWPGTDEA CGLGDGSEGA ACISNQQFHQ  240
QQNAPFMSLL MMQTPANLKE KDRMAEGNML WNRNPSDQAT QIWDFNLGQL RAHDESDPLE  300
YTACDVGYVM RSYGELLKEA SLGTTKGAEI SGFNCSIVHE DMVGFNNSNN PSASQGPATS  360
ESNNLAVGTA TSGSGIGKGK CYGGLKDFQL MNHNVLVKTE AVTAEITKAD MELLAKNRGN  420
AMKRYKEKKK TRRYDKHIRY ESRKARADTR KRVKGRFVKA NDAADGXMVS AGDXNNFTSN  480
AGCVPSRPSI IAVQMRYYIH LEQEPYSCRG LLLDVMFKTC VGESFICSTN KXMXLSLFKF  540
TSLVGILVKK PLFFFHVIAS KPSNKMVTHR SQIDFVHAMC FLTYDLAATL LGFRLLHLFL  600
RVLDHQAPXR KEKKMKDLSF FLLKNAFGAK MRKGFRNWCN GDDSTSTINR QRTEQGSAFA  660
IGSPPCLYAE TLRENQPTLE EMILQLELEE KAARRAKLDQ EYEEIRHRMS CVNSSDILRS  720
ARNALNQYPR FSLDGKDSMY RSSFQNNPTR LGKRFFPTTR QLPMPATIGG EDVVWCRPGI  780
VGKLMGLDAM PIPIGRYRRG LTAAMKRQQH LRRKKDKEDE IEKARLVVDW GGNDGVGGRR  840
GSCSRTGYCV MKPLRVDHLS DEDVGWPIRR FQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	811	816	RRKKDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096997.1	0.0	zinc finger protein CONSTANS-LIKE 15-like
TrEMBL	A0A1S4CFW6	0.0	A0A1S4CFW6_TOBAC; zinc finger protein CONSTANS-LIKE 14-like
TrEMBL	A0A1U7Y913	0.0	A0A1U7Y913_NICSY; zinc finger protein CONSTANS-LIKE 14-like
STRING	XP_009631919.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6703	21	26