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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23250_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 39840.8 Da PI: 7.7882 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.8e-50 | 15 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee......v.ikevdiykvePwdLpkkvkaeekewyfF 61 lppGfrFhP+deel+++yL kkv g + v + evd++k+ePw++p+++ + kewyf+ cra_locus_23250_iso_2_len_1153_ver_3 15 LPPGFRFHPRDEELICDYLMKKVVGGGggcdeD---QvqrypgVrMVEVDLNKSEPWEIPESACVGGKEWYFY 84 79*********************9999674441...2566777559**************7777799****** PP NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s+rd+ky++g r+nrat++gyWkatgkd++v++ k +lvg++ktLvfy+grapkg+ktdWvmhe+rl cra_locus_23250_iso_2_len_1153_ver_3 85 SQRDRKYSSGLRTNRATATGYWKATGKDRAVFR-KAKLVGMRKTLVFYQGRAPKGRKTDWVMHEFRL 150 *********************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-57 | 7 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.813 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 16 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSSNNNILSM VEAKLPPGFR FHPRDEELIC DYLMKKVVGG GGGCDEDQVQ RYPGVRMVEV 60 DLNKSEPWEI PESACVGGKE WYFYSQRDRK YSSGLRTNRA TATGYWKATG KDRAVFRKAK 120 LVGMRKTLVF YQGRAPKGRK TDWVMHEFRL QGSSLSSSSS SIHRIIKEED WVLCRVFFKN 180 REILPKQQLV NGAVVHGGDH HDIICSSLPP LMDPYINFTQ THNNNNNNNN NETNEQVPCF 240 SIFTPADQIS ISSSSSSSCQ PFSYLMASNT STYDPNLISN IMVPNFGGNL PEEFGGNKTV 300 VVRAVLNELT KMEQNNNNLN NPLITAVKSS PSFGEAAASS DSYLSEAALS TMWNQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-51 | 11 | 182 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062379.1 | 1e-123 | NAC domain-containing protein 21/22-like isoform X1 | ||||
TrEMBL | A0A068UYJ9 | 1e-118 | A0A068UYJ9_COFCA; Uncharacterized protein | ||||
STRING | XP_009605813.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |