PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22971_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 117aa MW: 12893.9 Da PI: 10.1725 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ L H +H cra_locus_22971_iso_1_len_370_ver_3 50 FSCKTCNKKFPTFQALGGHRASH 72 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 96 | 117 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C++Cg Fs L H+r+ cra_locus_22971_iso_1_len_370_ver_3 96 HQCSICGLKFSLGQALGGHMRR 117 79**********9999999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-8 | 48 | 116 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.3E-7 | 95 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 56 | 96 | 116 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MTVLKRSRED HDREAIESLA MANCLMLLST VGKTTNNSSP LIGSDNDRVF SCKTCNKKFP 60 TFQALGGHRA SHKKIKLLNS DLIIHNSADD VKPKTHQCSI CGLKFSLGQA LGGHMRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028094278.1 | 7e-44 | zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 2e-28 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | B2CZY8 | 2e-42 | B2CZY8_CAMSI; Putative cold-inducible protein | ||||
STRING | VIT_06s0004g04180.t01 | 7e-40 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |