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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2287_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44341.7 Da PI: 5.1545 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168 | 3.2e-52 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgk 72 l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+ cra_locus_2287_iso_5_len_1933_ver_3 28 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVSEIDVYKSEPWELAcfSSLKTRDLEWYFFSPVDRKYGNGS 100 579*************************99.88**************85347777888**************** PP NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r nrat +gyWkatgkd++v + k++++g+kktLvf++grap+g++t+Wvmheyrl cra_locus_2287_iso_5_len_1933_ver_3 101 RLNRATGKGYWKATGKDRPVRH-KNQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155 **********************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-62 | 24 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.73 | 28 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-28 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGQELVAVTP ATPVGGGISG SAPPATSLAP GFRFHPTDEE LVRYYLRRKA CGKPFRFQAV 60 SEIDVYKSEP WELACFSSLK TRDLEWYFFS PVDRKYGNGS RLNRATGKGY WKATGKDRPV 120 RHKNQTIGMK KTLVFHSGRA PDGKRTNWVM HEYRLVDEEL EKAGVPQDTF VLCRIFQKSG 180 LGPPNGDRYA PFIEEEWDDD AALMVVPGGE AEDDMANGDE ARVGCNDLDQ DMNKATRRGE 240 NPVEGMIPFM CKRERSEEPE PLSLGQAKRS KHDDPNSSHA NGSEDSTTTS QDPTLMTTTN 300 FSSALLEFPL LESVEPKESQ PSNPQTFDSS NLEKSVPPGY LKFISNLENE ILNVSMERET 360 LKIEVMRAQA MINILQSRID LLNKENEDLR RLGRGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104903.1 | 0.0 | NAC domain containing protein 50-like | ||||
Swissprot | Q9SQY0 | 1e-115 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A068TWS9 | 0.0 | A0A068TWS9_COFCA; Uncharacterized protein | ||||
STRING | XP_009619467.1 | 0.0 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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