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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22849_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 278aa MW: 30428.3 Da PI: 9.9479 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.6 | 1.5e-33 | 39 | 96 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAa+lGgha+DGCgEfm+s++++ +++a+lkCaACgCHRnFHRre ++ cra_locus_22849_iso_3_len_1022_ver_3 39 VVVYRECLKNHAANLGGHALDGCGEFMASPNANpSDPASLKCAACGCHRNFHRREIDD 96 689******************************9*********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 40 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-28 | 40 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.2E-30 | 42 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.856 | 42 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-28 | 147 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.87E-19 | 149 | 214 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.4E-25 | 156 | 213 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
XGRGTLKKFH YPYHHHRHGH HHHRQFGAGG GTNPVAAAVV VYRECLKNHA ANLGGHALDG 60 CGEFMASPNA NPSDPASLKC AACGCHRNFH RREIDDHRFS NSQHFLDFRR PSSPPSQMLL 120 ALSNAAQETQ QQQNHHQVAT PVTPTAAKTE NHLSGRKRFR TKFSQEQKER MFSFSEKLGW 180 KMQKSDDSMI REFCNEIGVG KGVLKVWMHN NKNKKDIVIV VGGGGGNGGN INGGGDRDNN 240 NNNNVNDNNN GSSHDQNNAA VHLQASTTTA GSISSPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 157 | 213 | 18 | 74 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099598.1 | 7e-89 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 1e-56 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2U1LEG9 | 5e-72 | A0A2U1LEG9_ARTAN; Uncharacterized protein | ||||
STRING | Solyc05g007580.1.1 | 4e-71 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Publications ? help Back to Top | |||
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