![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_22691_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 25784.1 Da PI: 7.1964 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 60.5 | 3.2e-19 | 2 | 40 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 prsYY+CtsagCpv+k+ver++ed k v++tYeg+Hnhe cra_locus_22691_iso_1_len_691_ver_3 2 PRSYYKCTSAGCPVRKHVERASEDIKSVITTYEGKHNHE 40 9*************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.099 | 1 | 42 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-14 | 2 | 42 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-13 | 2 | 40 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-18 | 2 | 42 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-10 | 2 | 41 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
XPRSYYKCTS AGCPVRKHVE RASEDIKSVI TTYEGKHNHE VPTAKTNIGQ ASIGNSPPNI 60 SDPHSILTLP RNSNSSNPEI QVQDLSLHYQ MKPNDFSQPD LLGDLVSDIK LGAASSIYQM 120 KFPLMQSHHM PYSHFVMNSS GSHETHXISA PVMPEFPMAV PMSIRRSTNV AVGSSFNSNN 180 HSRINSLVHS SAGNQRMKES DFMFFKPKEE QKDDHVYETC LTTPDNANPT SX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-16 | 2 | 42 | 37 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-16 | 2 | 42 | 37 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087611.1 | 2e-73 | WRKY transcription factor SUSIBA2-like | ||||
TrEMBL | A0A068U7U3 | 2e-74 | A0A068U7U3_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5767 | 22 | 37 |