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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22400_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 631aa MW: 69442.9 Da PI: 4.7902 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.6e-52 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatg 71 lp+G+rF+Ptdeel+++yL+ k++g + e+ ++i+evdi+k+ePwdLp + v++ ++ew+fF+++d+ky++g cra_locus_22400_iso_6_len_2145_ver_3 9 LPVGYRFRPTDEELINHYLRLKITGFDKEV-NIIREVDICKLEPWDLPdlSLVESYDDEWFFFCPKDRKYQNG 80 799************************999.89**************96447777889*************** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r nrat +gyWkatgkd++++s+kg ++g+kktLvfy+grap+g++t+Wv+heyr+ cra_locus_22400_iso_6_len_2145_ver_3 81 QRLNRATLKGYWKATGKDRNIVSRKGVKIGMKKTLVFYTGRAPDGKRTNWVIHEYRA 137 *******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-58 | 4 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.48 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-26 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MAVLPVKSLP VGYRFRPTDE ELINHYLRLK ITGFDKEVNI IREVDICKLE PWDLPDLSLV 60 ESYDDEWFFF CPKDRKYQNG QRLNRATLKG YWKATGKDRN IVSRKGVKIG MKKTLVFYTG 120 RAPDGKRTNW VIHEYRATQK ELDGTHPGQG AFVLCRLFKK HDLRLDENAE NSNCDDVEPN 180 LSPPTVVKSP AEDEHFETLT PSFGGQAEMP PLSKEGSPAN LGDGAAVVEP LPINWHNSGC 240 NDCKTEDQVL ESISFPPDPE LEKALRDLCE PMPESLDWKI FSPLHSQMQV ELGSSYLYNP 300 VNCDVSNNTM STPFQYGTNA LDINKFLNSV LVNTNDSPNE DSGIYSISAV ESGTPEVIDG 360 ISRSFVKDTG SCSESEAEVT QQQVDPGFSE SELLMSHMEQ DTSFKADITS QLPFKQQEAY 420 RSGFSTGNQG RQLNVLGNEY LGYNSTSASF SGYQVPDFLN AEGPGGCGTA LVGDNGTGIK 480 IRSRQVQNPS GASSFVVQGS APRRIRLQKK LQVGPVSCSM ARGSVHSNTD NKGPSTELED 540 EKANKKLDDG DAFAPAITNE IPAILLQESK ATEDLSEPIG DFVTGGGRDS PVCSKVHKLS 600 MALVYMPKVL VMVSLVVVVF GGVWGGLRYI Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 8 | 161 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 8 | 161 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027159678.1 | 0.0 | protein NTM1-like 9 isoform X2 | ||||
TrEMBL | A0A068U8Z4 | 0.0 | A0A068U8Z4_COFCA; Uncharacterized protein | ||||
STRING | XP_009608176.1 | 0.0 | (Nicotiana tomentosiformis) |