PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22400_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 656aa    MW: 72075.8 Da    PI: 4.9273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22400_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78.1e-5291371128
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatg 71 
                                           lp+G+rF+Ptdeel+++yL+ k++g + e+ ++i+evdi+k+ePwdLp  + v++ ++ew+fF+++d+ky++g
  cra_locus_22400_iso_5_len_2220_ver_3   9 LPVGYRFRPTDEELINHYLRLKITGFDKEV-NIIREVDICKLEPWDLPdlSLVESYDDEWFFFCPKDRKYQNG 80 
                                           799************************999.89**************96447777889*************** PP

                                   NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                           +r nrat +gyWkatgkd++++s+kg ++g+kktLvfy+grap+g++t+Wv+heyr+
  cra_locus_22400_iso_5_len_2220_ver_3  81 QRLNRATLKGYWKATGKDRNIVSRKGVKIGMKKTLVFYTGRAPDGKRTNWVIHEYRA 137
                                           *******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-584160IPR003441NAC domain
PROSITE profilePS5100555.489160IPR003441NAC domain
PfamPF023658.7E-2610136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAVLPVKSLP VGYRFRPTDE ELINHYLRLK ITGFDKEVNI IREVDICKLE PWDLPDLSLV  60
ESYDDEWFFF CPKDRKYQNG QRLNRATLKG YWKATGKDRN IVSRKGVKIG MKKTLVFYTG  120
RAPDGKRTNW VIHEYRATQK ELDGTHPGQG AFVLCRLFKK HDLRLDENAE NSNCDDVEPN  180
LSPPTVVKSP AEDEHFETLT PSFGGQAEMP PLSKEGSPAN LGDGAAVVEP LPINWHNSGC  240
NDCKTEDQVL ESISFPPDPE LEKALRDLCE PMPESLDWKI FSPLHSQMQV ELGSSYLYNP  300
VNCDVSNNTM STPFQYGTNA LDINKFLNSV LVNTNDSPNE DSGIYSISAV ESGTPEVIDG  360
ISRSFVKDTG SCSESEAEVT QQQVDPGFSE SELLMSHMEQ DTSFKADITS QLPFKQQEAY  420
RSGFSTGNQG RQLNVLGNEY LGYNSTSASF SGYQVPDFLN AEGPGGCGTA LVGDNGTGIK  480
IRSRQVQNPS GASSFVVQGS APRRIRLQKK LQVGPVSCSM ARGSVHSNTD NKGPSTELEV  540
RFLALCSXIL KLLAVSKPSG SNSQDEKANK KLDDGDAFAP AITNEIPAIL LQESKATEDL  600
SEPIGDFVTG GGRDSPVCSK VHKLSMALVY MPKVLVMVSL VVVVFGGVWG GLRYIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44816116166NO APICAL MERISTEM PROTEIN
1ut4_B1e-44816116166NO APICAL MERISTEM PROTEIN
1ut7_A1e-44816116166NO APICAL MERISTEM PROTEIN
1ut7_B1e-44816116166NO APICAL MERISTEM PROTEIN
4dul_A1e-44816116166NAC domain-containing protein 19
4dul_B1e-44816116166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159677.10.0NAC domain-containing protein 14-like isoform X1
TrEMBLA0A068U8Z40.0A0A068U8Z4_COFCA; Uncharacterized protein
STRINGXP_009608176.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448