PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22395_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 344aa    MW: 37079.6 Da    PI: 6.4016
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22395_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33187244259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  cra_locus_22395_iso_3_len_1592_ver_3 187 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDPTIVITTYEGQHCHH 244
                                           8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33171245IPR003657WRKY domain
SuperFamilySSF1182903.79E-28178244IPR003657WRKY domain
PROSITE profilePS5081129.643181246IPR003657WRKY domain
SMARTSM007741.5E-38186245IPR003657WRKY domain
PfamPF031061.6E-25187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDPVSEFNTT VSSSGWTLPG AADAHDSVDN VYFFGSNSDR ILSEFGWNLP PPPAATHAFK  60
EPGGSCSARG GYGELDRIID SDLAGNCDKT SIVPESTTST FATTAATTSS GGYGGGGGCG  120
GEMDAEQQPV ASSSSSEDQP EKSTASGGSA SKPTTTETAS KVKKKGQKRI RQPRFAFMTK  180
SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTNTKCTVK KRVERSSEDP TIVITTYEGQ  240
HCHHTVGFPR SGLINHEAAA FASPLTTPSN PSQFYYTGVP FPQESLLTRE SFQYSREGGD  300
TRILPEPTAP QSTDEGLLGD IVPPDFKSVK FISYQFXVGK YTGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25176243774Probable WRKY transcription factor 4
2lex_A4e-25176243774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027098617.11e-109probable WRKY transcription factor 57
RefseqXP_027098618.11e-109probable WRKY transcription factor 57
RefseqXP_027098620.11e-109probable WRKY transcription factor 57
RefseqXP_027151125.11e-109probable WRKY transcription factor 57
RefseqXP_027151126.11e-109probable WRKY transcription factor 57
RefseqXP_027151127.11e-109probable WRKY transcription factor 57
TrEMBLA0A068TYH91e-102A0A068TYH9_COFCA; Uncharacterized protein
STRINGSolyc05g012500.2.14e-95(Solanum lycopersicum)
STRINGXP_009610330.12e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80312228