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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22369_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | RAV | ||||||||
Protein Properties | Length: 355aa MW: 40542.9 Da PI: 9.3341 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 7.9e-09 | 76 | 123 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s+ kGV +g W A+I+ + +r++lg+f ++ eAa a++ a kl+ cra_locus_22369_iso_1_len_1716_ver_3 76 SKLKGVVLQQ-NGHWGAQIYA------NhQRIWLGTFKSEVEAAMAYDSASIKLR 123 6889998777.8******999......44**********99*********99997 PP | |||||||
2 | B3 | 86.3 | 2.6e-27 | 194 | 291 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT............---......--SEEEEEETTS-EEEEEE..EEETT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke....esktltledesgrsWevkliyrkksg 57 f k+ltpsdv+k++rlv+pkkfa + + e +++l++ d+ rsW+++++y+k+s+ cra_locus_22369_iso_1_len_1716_ver_3 194 FHKELTPSDVGKLNRLVIPKKFAVMYfpripemgednnE---EnagiDDTELVFFDRAMRSWKFRYCYWKSSQ 263 89**************************99999875441...245566789********************** PP EEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 58 ryvltkGWkeFvkangLkegDfvvFkld 85 ++v+t+GW++Fvk++gL+++D+++F++ cra_locus_22369_iso_1_len_1716_ver_3 264 SFVFTRGWNRFVKDKGLRAKDMIMFSFC 291 *************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.33E-22 | 76 | 134 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-14 | 76 | 133 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-4 | 76 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.975 | 77 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-14 | 77 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-14 | 78 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd10017 | 2.12E-23 | 192 | 297 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-30 | 192 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-26 | 193 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.098 | 194 | 308 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-24 | 194 | 291 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-19 | 194 | 299 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MASSISSARY QLLLFPVGKT RTNHSSNLPA RLSMEEQSEI SMAATNFTKE MSDSSSSSYL 60 IQNSKRPKMD PNSSSSKLKG VVLQQNGHWG AQIYANHQRI WLGTFKSEVE AAMAYDSASI 120 KLRSGDSHRN FPWTNITIQE PNFQSQFSTE IVLNMIKDGS YSSKFLDYLR EVSKIGQDLV 180 NPPKNGAFFC RKLFHKELTP SDVGKLNRLV IPKKFAVMYF PRIPEMGEDN NEENAGIDDT 240 ELVFFDRAMR SWKFRYCYWK SSQSFVFTRG WNRFVKDKGL RAKDMIMFSF CEWKGGNNDQ 300 MESLFMIDVG YYEGIHGGLV QNDTAASFVE EKDSQETESK GSKKKGFRLF GVQII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-25 | 193 | 289 | 13 | 101 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067685.1 | 1e-150 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C6P5 | 1e-103 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A068V502 | 1e-149 | A0A068V502_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0037g00010.t01 | 1e-124 | (Vitis vinifera) |