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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2220_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 480aa MW: 53777.7 Da PI: 7.566 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.9e-10 | 384 | 431 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v q+G g+W+ I + + +Rt+ ++k++w+++l cra_locus_2220_iso_9_len_1865_ver_3 384 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 431 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.901 | 376 | 435 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-13 | 378 | 436 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-15 | 378 | 441 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 380 | 433 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-8 | 384 | 431 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.04E-20 | 384 | 432 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
XEHLLGQEVR DIMPNENESG KLQAPNALLT CEDYLLDIES GESITKLDYH LGKGSQNLVL 60 ESHTEENKAG YNGPPQESQL SCPIDWMHDF PEDLDMNDYE SNGIFSCSPN SELSADRWFK 120 YPTSFPVESI EQLEDVSGMF PVKNEKNTTS SPGLKSEEMF CSSITEQQNV YESVGQHAEG 180 EPNIGQDVSR CPPQGSVICP PTGKRLRKPP HRFIDELLEP NSRQVRRKFS IPASKGKSSN 240 VKHHKHYCVK SKAERSFSGE PAAIAIQVPF GPLICEEREK KQVPVVTKVI HPKPIASMAI 300 SEGDCISSRK KQTPVAPKVL HSKPIASVAK SEEDFVSSQQ MQLCIVPKVL DSEPVASVAT 360 SGEDSLSIMK TVEEGGRRKH HILWTVSEVK KLIDGVSQYG VGRWSHIKKD LFSSSAHRTA 420 VDLKDKWRNL LKATCVQTEG KRGEDKKRNL AWRPLPKSVI RRVRELAVLY PYPRDFQTKH |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9155 | 17 | 23 |