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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2220_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 458aa MW: 51280.7 Da PI: 8.0735 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 362 | 409 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v q+G g+W+ I + + +Rt+ ++k++w+++l cra_locus_2220_iso_3_len_1798_ver_3 362 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 409 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.901 | 354 | 413 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-15 | 356 | 419 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-13 | 356 | 414 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 358 | 411 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-8 | 362 | 409 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.82E-20 | 362 | 410 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
XTCEDYLLGE LLAXNIESGE SITKLDYHLG KGSQNLVLES HTEENKAGYN GPPQESQLSC 60 PIDWMHDFPE DLDMNDYESN GIFSCSPNSE LSADRWFKYP TSFPVESIEQ LEDVSGMFPV 120 KNEKNTTSSP GLKSEEMFCS SITEQQNVYE SVGQHAEGEP NIGQDVSRCP PQGSVICPPT 180 GKRLRKPPHR FIDELLEPNS RQVRRKFSIP ASKGKSSNVK HHKHYCVKSK AERSFSGEPA 240 AIAIQVPFGP LICEEREKKQ VPVVTKVIHP KPIASMAISE GDCISSRKKQ TPVAPKVLHS 300 KPIASVAKSE EDFVSSQQMQ LCIVPKVLDS EPVASVATSG EDSLSIMKTV EEGGRRKHHI 360 LWTVSEVKKL IDGVSQYGVG RWSHIKKDLF SSSAHRTAVD LKDKWRNLLK ATCVQTEGKR 420 GEDKKRNLAW RPLPKSVIRR VRELAVLYPY PRDFQTKH |