PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22149_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 284aa MW: 30849.7 Da PI: 5.6721

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22149_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38	4.6e-12	46	89	56	99
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++++sl+yeA+ r+ +P+yG+vg+++++++ql+q ++e++l ++ cra_locus_22149_iso_3_len_1011_ver_3 46 AIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQDAVEAVLKGA 89 789**********************************9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.8E-7	45	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
XAGPEHLRPG SFITQIKXHK CEYYVNSLXI TGFLTDGFVN FCSVAAIFRS LLYEACGRIV 60 NPIYGSVGLL WSGSWQLCQD AVEAVLKGAP ITQIASEAAE TQNGPPLKGY DIRHVNKNES 120 AAVSNDLRRV RTRCRFKRSA ATVTAAKAKG KACRVSVESV DQDEEANRST SHESSLSHQS 180 EPAGRNVEGE SRDVESLACA ETALENHEVA ERDQKEEQVD DGEIELELTL GLEPLSRAHA 240 VKPKGIRRNS RDVDSAAAAG GGFCTMELAL DYLSRVNDKS VLTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077434.1	9e-84	LOB domain-containing protein 41-like
Refseq	XP_027077531.1	9e-84	LOB domain-containing protein 41-like
TrEMBL	A0A498J7N0	1e-77	A0A498J7N0_MALDO; Uncharacterized protein
STRING	XP_008348114.1	1e-76	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94