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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21851_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 344aa MW: 39162.3 Da PI: 7.2405 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + Fs+ L H+r+H cra_locus_21851_iso_2_len_1212_ver_3 4 HQCKLCLRNFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 211 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H cra_locus_21851_iso_2_len_1212_ver_3 211 YRCETCKKGFRSYQALGGHRASH 233 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.1 | 0.0013 | 264 | 286 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C + Fs+ L H rtH cra_locus_21851_iso_2_len_1212_ver_3 264 HKCPVCFRIFSSGQALGGHKRTH 286 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.2E-6 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.27E-8 | 211 | 286 | No hit | No description |
Pfam | PF13912 | 8.0E-10 | 211 | 235 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.088 | 211 | 233 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 211 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 213 | 233 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-9 | 263 | 286 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.286 | 264 | 286 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 264 | 286 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEKHQCKLCL RNFSNGRALG GHMRSHVMNL YVKSNPNKNQ TQFSEEETES LPSSSSSSSS 60 SEEEEEIETN RGLISNGVLE KFKFRKRNWL SSMEPNDQFS AVLQGDRESE TESSKKSSSF 120 RRSKRIRRSR ISEFSNVKQE EEPNRGKSPI ESEFSPLLLD QEPEESSISD ITPEEDVAYC 180 LMMLSRDKWN EESEEFGGKK GKKQNRNRGK YRCETCKKGF RSYQALGGHR ASHKRSKVSE 240 EQESSSMVET NNNNEEEEEK KKVHKCPVCF RIFSSGQALG GHKRTHGLII NQSAAMAAAA 300 AANNNNRPFS RIGRETLIDL NLPAPMEDEL SAVSDDEFLN YNRH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
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