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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21851_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 39291.4 Da PI: 6.9958 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + Fs+ L H+r+H cra_locus_21851_iso_1_len_1215_ver_3 4 HQCKLCLRNFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H cra_locus_21851_iso_1_len_1215_ver_3 212 YRCETCKKGFRSYQALGGHRASH 234 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.1 | 0.0013 | 265 | 287 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C + Fs+ L H rtH cra_locus_21851_iso_1_len_1215_ver_3 265 HKCPVCFRIFSSGQALGGHKRTH 287 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.3 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.2E-6 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.088 | 212 | 234 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 212 | 239 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.42E-8 | 212 | 287 | No hit | No description |
Pfam | PF13912 | 8.0E-10 | 212 | 236 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-9 | 264 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 265 | 287 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 265 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 267 | 287 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MEKHQCKLCL RNFSNGRALG GHMRSHVMNL YVKSNPNKNQ TQFSEEETES LPSSSSSSSS 60 SEEEEEEIET NRGLISNGVL EKFKFRKRNW LSSMEPNDQF SAVLQGDRES ETESSKKSSS 120 FRRSKRIRRS RISEFSNVKQ EEEPNRGKSP IESEFSPLLL DQEPEESSIS DITPEEDVAY 180 CLMMLSRDKW NEESEEFGGK KGKKQNRNRG KYRCETCKKG FRSYQALGGH RASHKRSKVS 240 EEQESSSMVE TNNNNEEEEE KKKVHKCPVC FRIFSSGQAL GGHKRTHGLI INQSAAMAAA 300 AAANNNNRPF SRIGRETLID LNLPAPMEDE LSAVSDDEFL NYNRH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022862920.1 | 8e-79 | zinc finger protein ZAT4-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |