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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21743_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 142aa MW: 16185.4 Da PI: 3.9753 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.3 | 3.9e-12 | 2 | 28 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLv+y+grap+g +tdWvmheyrl cra_locus_21743_iso_2_len_483_ver_3 2 MKKTLVYYRGRAPQGIRTDWVMHEYRL 28 9************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.541 | 1 | 53 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-4 | 2 | 28 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-15 | 2 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
XMKKTLVYYR GRAPQGIRTD WVMHEYRLDD KESDQDTSGI QVDSYALCRV FKKNGICSEI 60 EEQGQSSNSL SLLDYSSQGV VINEYEQTFS PDVPLASSSC MDEEDKEDKD DSWMQFITDD 120 AWCSSTNPFG NEEVVAQLTF TN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442302.1 | 4e-66 | NAC domain-containing protein 86 isoform X1 | ||||
TrEMBL | A0A2K1XH72 | 9e-65 | A0A2K1XH72_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s05450.1 | 6e-63 | (Populus trichocarpa) |