PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21743_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19839.5 Da PI: 4.1654 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.9 | 1.7e-22 | 4 | 74 | 29 | 98 |
NAM 29 eleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v s+++ cra_locus_21743_iso_1_len_573_ver_3 4 EL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQNTX 74 45.78**************84335556888************************************996554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.377 | 1 | 117 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-24 | 4 | 81 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-6 | 31 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
QEIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR DRKYPNGFRT NRATRAGYWK 60 STGKDRRVSS QNTXYALCRV FKKNGICSEI EEQGQSSNSL SLLDYSSQGV VINEYEQTFS 120 PDVPLASSSC MDEEDKEDKD DSWMQFITDD AWCSSTNPFG NEEVVAQLTF TN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-21 | 1 | 81 | 40 | 118 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374257.1 | 1e-83 | NAC domain-containing protein 86 isoform X2 | ||||
Refseq | XP_024442302.1 | 1e-83 | NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_027168991.1 | 1e-83 | NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_027168992.1 | 1e-83 | NAC domain-containing protein 86 isoform X2 | ||||
TrEMBL | A0A068TRH5 | 3e-86 | A0A068TRH5_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0015s05450.1 | 4e-83 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4621 | 24 | 42 |