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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21610_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 240aa MW: 26419.1 Da PI: 7.9888 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.1 | 4.4e-33 | 44 | 100 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rY+eClkNhA+ +GghavDGCgEfmp+ ge+gt +alkCaAC+CHRnFHR+e+e cra_locus_21610_iso_1_len_1406_ver_3 44 TTYRYRECLKNHAVGIGGHAVDGCGEFMPA-GEDGTLDALKCAACNCHRNFHRKESEG 100 5789*************************9.999********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-30 | 46 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-24 | 47 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-30 | 47 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.805 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.02E-21 | 164 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-32 | 166 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.5E-25 | 177 | 233 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEFDEHEEQE EEIGMTPQNQ MQGVSGGGGG GGGGTARKGG DRTTTYRYRE CLKNHAVGIG 60 GHAVDGCGEF MPAGEDGTLD ALKCAACNCH RNFHRKESEG EGFHQSHHHP HHSHHQFSSP 120 YAFRSAQPSG YLHVTHPPHH HLQQRPLALP STSRDDELDA SNPSSSGGGG GGSGGSKRRF 180 RTKFTQEQKD KMLAFAERVG WRIQKQDEAA VQQFCAETNV KRHVLKVWMH NNKHTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 176 | 235 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 34 | SGGGGGGGGGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028066851.1 | 2e-98 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 8e-80 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A200PUE8 | 1e-102 | A0A200PUE8_9MAGN; ZF-HD homeobox protein | ||||
STRING | XP_010266504.1 | 5e-96 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Publications ? help Back to Top | |||
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