PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TALE

Protein Properties

Length: 316aa MW: 35846 Da PI: 6.3485

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21390_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	242	278	19	55
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ cra_locus_21390_iso_1_len_1024_ver_3 242 HYKWPYPSETQKLALAESTGLDQKQINNWFINQRKRH 278 44679*****************************885 PP
2	ELK	41.3	3.1e-14	198	219	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ cra_locus_21390_iso_1_len_1024_ver_3 198 ELKGQLLRKYSGYLGSLKQEFM 219 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	6.6E-20	57	101	IPR005540	KNOX1
Pfam	PF03790	2.2E-22	59	97	IPR005540	KNOX1
SMART	SM01256	1.6E-26	108	159	IPR005541	KNOX2
Pfam	PF03791	3.7E-21	111	157	IPR005541	KNOX2
SMART	SM01188	2.8E-8	198	219	IPR005539	ELK domain
Pfam	PF03789	5.1E-11	198	219	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	198	218	IPR005539	ELK domain
PROSITE profile	PS50071	13.119	218	281	IPR001356	Homeobox domain
SMART	SM00389	4.1E-13	220	285	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-20	220	292	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-28	223	283	IPR009057	Homeodomain-like
CDD	cd00086	1.44E-12	230	282	No hit	No description
Pfam	PF05920	8.9E-17	238	277	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	256	279	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
XATSNQNNHR QPPSNSMMLQ QQQEDSHHNN NVVTAATAVG CYFMDDNINN IDGSSSNSVK 60 AKIMSHPHYH RLLAAYINCQ KIGAPPDVVA RLEEACSSAA ATMVRSSSSS CIGEDPALDQ 120 FMEAYCEMLT KYEQELSKPF KEAMLFLSRI ECQFKALSLA TSSHDSAMAE AAVDRNGSSE 180 EDVDVNNSFV DPQAEDRELK GQLLRKYSGY LGSLKQEFMK KRKKGKLPKE ARQQLLDWWE 240 KHYKWPYPSE TQKLALAEST GLDQKQINNW FINQRKRHWK PSEDMQFVVM DATQSHYYMD 300 NVLGNPFPMD ISPALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	222	LKQEFMKKRK
2	219	223	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00675	ChIP-seq	Transfer from GRMZM2G017087	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089412.1	1e-169	homeobox protein knotted-1-like LET6 isoform X2
Refseq	XP_027147802.1	1e-169	homeobox protein knotted-1-like LET6
Swissprot	P46608	1e-147	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A068U8C3	1e-168	A0A068U8C3_COFCA; Uncharacterized protein
STRING	XP_002518420.1	1e-165	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6835	24	33

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]