PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_21328_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CO-like

Protein Properties

Length: 416aa MW: 46552.1 Da PI: 4.8376

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21328_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.3	1.7e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v cra_locus_21328_iso_1_len_1397_ver_3 17 ARACESCLRKRARWFCAADDAFLCQSCDSSVHSAnqlasrHERV 60 578*****************************667888888877 PP
2	CCT	69.5	8.8e-24	359	402	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ cra_locus_21328_iso_1_len_1397_ver_3 359 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 402 9*****************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.149	15	62	IPR000315	B-box-type zinc finger
SMART	SM00336	2.6E-11	15	62	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.5E-8	17	61	IPR000315	B-box-type zinc finger
CDD	cd00021	2.08E-10	18	62	No hit	No description
PROSITE profile	PS51017	16.003	359	401	IPR010402	CCT domain
Pfam	PF06203	3.8E-18	359	401	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MLTAEGRTAN ALGGKTARAC ESCLRKRARW FCAADDAFLC QSCDSSVHSA NQLASRHERV 60 RIETSSSSSF NFRSTESKLH DQISDPVWHH GFTRKARTPR HHQKPPVLKK DNNNNIVNSL 120 NSSLPLVPEI GVEENNSPDE NDDEQFLYRV PVFDPLFFGG GGDSNNEIES FFKDEFIDSD 180 AKLAELAADV ENLLGSTTEL DEDLAAAGVV SNNFIASDFM NNNRVKIEED DEDEEVQAVI 240 ASHFDPALDS ARESLSWDFD YSSSSPVIGG DEDLETKMMI ELPENEFETK PEGMRKIFLK 300 LNYDDIINTW DSQNCPWTNG TRPDFNCHDF VGNGCGTFEQ AYGVGAGAAA GGGGRDEERE 360 ARVLRYKEKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTSLLPGSSS SSSNNX

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MLTAEGRTAN ALGGKTARAC ESCLRKRARW FCAADDAFLC QSCDSSVHSA NQLASRHERV  60
RIETSSSSSF NFRSTESKLH DQISDPVWHH GFTRKARTPR HHQKPPVLKK DNNNNIVNSL  120
NSSLPLVPEI GVEENNSPDE NDDEQFLYRV PVFDPLFFGG GGDSNNEIES FFKDEFIDSD  180
AKLAELAADV ENLLGSTTEL DEDLAAAGVV SNNFIASDFM NNNRVKIEED DEDEEVQAVI  240
ASHFDPALDS ARESLSWDFD YSSSSPVIGG DEDLETKMMI ELPENEFETK PEGMRKIFLK  300
LNYDDIINTW DSQNCPWTNG TRPDFNCHDF VGNGCGTFEQ AYGVGAGAAA GGGGRDEERE  360
ARVLRYKEKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTSLLPGSSS SSSNNX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	385	RRTRLFSKKIRYEVRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167869.1	1e-133	zinc finger protein CONSTANS-LIKE 16-like
TrEMBL	A0A068TQ36	1e-130	A0A068TQ36_COFCA; Uncharacterized protein
STRING	POPTR_0015s06480.1	1e-119	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1539	24	70