PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2128_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 553aa    MW: 61082.4 Da    PI: 4.348
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2128_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.78.5e-4891651128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................... 49 
                                          l+pGfrFhPtdeelv +yL++k+ +k++++ ++i+e+diyk+ePwdLp                          
  cra_locus_2128_iso_6_len_2544_ver_3   9 LAPGFRFHPTDEELVRYYLRRKICSKPFRF-DAISEIDIYKAEPWDLPGlhictrqdmklhqldsirhyptifi 81 
                                          579**************************9.99***************5589*******************999 PP

                                  NAM  50 ....kvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117
                                               vkae++   + fFs  dkky +g+r+nrat++gyWk+tgkd++v++ k+++vg+kktLv+++grapkg+
  cra_locus_2128_iso_6_len_2544_ver_3  82 ftsrYVKAEDQgpGMDFFSVLDKKYGNGSRTNRATDRGYWKTTGKDRPVYH-KSQVVGMKKTLVYHSGRAPKGQ 154
                                          9998444444444889***********************************.999******************* PP

                                  NAM 118 ktdWvmheyrl 128
                                          +t+Wvmheyrl
  cra_locus_2128_iso_6_len_2544_ver_3 155 RTNWVMHEYRL 165
                                          *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-20360IPR003441NAC domain
PROSITE profilePS5100550.5829188IPR003441NAC domain
PfamPF023651.2E-2411165IPR003441NAC domain
SuperFamilySSF1019411.44E-3498188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MISKGSSSLA PGFRFHPTDE ELVRYYLRRK ICSKPFRFDA ISEIDIYKAE PWDLPGLHIC  60
TRQDMKLHQL DSIRHYPTIF IFTSRYVKAE DQGPGMDFFS VLDKKYGNGS RTNRATDRGY  120
WKTTGKDRPV YHKSQVVGMK KTLVYHSGRA PKGQRTNWVM HEYRLIDEEL GKAGISQDAF  180
VLCRVFQKSG SGPKNGEQYG APFVEEEWEE DELEILPKDE AADEVEVGDD AYLDGDDLKQ  240
ILAADIQTDN VSFTPNCYTG EDAAFVEEAT ESIGDSQKLS VGAGEYDNGN NQSDDQNAYH  300
LPVQYDMYQK AVKHEYIGES SKTADPQGVD YLLEEPFVDA TDNLQFGDGG FLETNDLSNP  360
IDADAAGFDM LEEYLTFLDA DGDIAFDPLV MEGGQNNISG ESSAAEKDVE EGIETGMPSK  420
QLEHDNDATS SKEASSKFGS GYQYPFMKQA SQMLGSFPAP PAFASEFPSK DVALRLNSAS  480
QPSSSVHVTA GMIRIRNMSM DGHGTTDWFL GKHSQYNVTL SFGVSGGDDN STTLESAVGI  540
LPGKAVSPTP IGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-40819416171NO APICAL MERISTEM PROTEIN
1ut4_B5e-40819416171NO APICAL MERISTEM PROTEIN
1ut7_A5e-40819416171NO APICAL MERISTEM PROTEIN
1ut7_B5e-40819416171NO APICAL MERISTEM PROTEIN
3swm_A5e-40819419174NAC domain-containing protein 19
3swm_B5e-40819419174NAC domain-containing protein 19
3swm_C5e-40819419174NAC domain-containing protein 19
3swm_D5e-40819419174NAC domain-containing protein 19
3swp_A5e-40819419174NAC domain-containing protein 19
3swp_B5e-40819419174NAC domain-containing protein 19
3swp_C5e-40819419174NAC domain-containing protein 19
3swp_D5e-40819419174NAC domain-containing protein 19
4dul_A5e-40819416171NAC domain-containing protein 19
4dul_B5e-40819416171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104902.10.0NAC domain-containing protein 78-like
TrEMBLA0A068TV210.0A0A068TV21_COFCA; Uncharacterized protein
STRINGXP_009599412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450