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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2128_iso_10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 524aa MW: 57789.6 Da PI: 4.2855 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.8e-54 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatg 71 l+pGfrFhPtdeelv +yL++k+ +k++++ ++i+e+diyk+ePwdLp +k+k+++ ewyfFs dkky +g cra_locus_2128_iso_10_len_2456_ver_3 9 LAPGFRFHPTDEELVRYYLRRKICSKPFRF-DAISEIDIYKAEPWDLPgmSKLKTRDLEWYFFSVLDKKYGNG 80 579**************************9.99***************6337778888*************** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nrat++gyWk+tgkd++v++ k+++vg+kktLv+++grapkg++t+Wvmheyrl cra_locus_2128_iso_10_len_2456_ver_3 81 SRTNRATDRGYWKTTGKDRPVYH-KSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 136 ***********************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-64 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.991 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MISKGSSSLA PGFRFHPTDE ELVRYYLRRK ICSKPFRFDA ISEIDIYKAE PWDLPGMSKL 60 KTRDLEWYFF SVLDKKYGNG SRTNRATDRG YWKTTGKDRP VYHKSQVVGM KKTLVYHSGR 120 APKGQRTNWV MHEYRLIDEE LGKAGISQDA FVLCRVFQKS GSGPKNGEQY GAPFVEEEWE 180 EDELEILPKD EAADEVEVGD DAYLDGDDLK QILAADIQTD NVSFTPNCYT GEDAAFVEEA 240 TESIGDSQKL SVGAGEYDNG NNQSDDQNAY HLPVQYDMYQ KAVKHEYIGE SSKTADPQGV 300 DYLLEEPFVD ATDNLQFGDG GFLETNDLSN PIDADAAGFD MLEEYLTFLD ADGDIAFDPL 360 VMEGGQNNIS GESSAAEKDV EEGIETGMPS KQLEHDNDAT SSKEASSKFG SGYQYPFMKQ 420 ASQMLGSFPA PPAFASEFPS KDVALRLNSA SQPSSSVHVT AGMIRIRNMS MDGHGTTDWF 480 LGKHSQYNVT LSFGVSGGDD NSTTLESAVG ILPGKAVSPT PIGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-48 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-48 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-48 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-48 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-48 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-48 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104902.1 | 0.0 | NAC domain-containing protein 78-like | ||||
Swissprot | Q84K00 | 1e-148 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A068TV21 | 0.0 | A0A068TV21_COFCA; Uncharacterized protein | ||||
STRING | XP_009625486.1 | 0.0 | (Nicotiana tomentosiformis) |