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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2128_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 41817.7 Da PI: 5.3351 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.5 | 1.5e-54 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgk 72 l+pGfrFhPtdeelv +yL++k+ +k++++ ++i+e+diyk+ePwdLp +k+k+++ ewyfFs dkky +g+ cra_locus_2128_iso_1_len_2016_ver_3 9 LAPGFRFHPTDEELVRYYLRRKICSKPFRF-DAISEIDIYKAEPWDLPgmSKLKTRDLEWYFFSVLDKKYGNGS 81 579**************************9.99***************6337778888**************** PP NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nrat++gyWk+tgkd++v++ k+++vg+kktLv+++grapkg++t+Wvmheyrl cra_locus_2128_iso_1_len_2016_ver_3 82 RTNRATDRGYWKTTGKDRPVYH-KSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 136 **********************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-64 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.991 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MISKGSSSLA PGFRFHPTDE ELVRYYLRRK ICSKPFRFDA ISEIDIYKAE PWDLPGMSKL 60 KTRDLEWYFF SVLDKKYGNG SRTNRATDRG YWKTTGKDRP VYHKSQVVGM KKTLVYHSGR 120 APKGQRTNWV MHEYRLIDEE LGKAGISQDA FVLCRVFQKS GSGPKNGEQY GAPFVEEEWE 180 EDELEILPKD EAADEVEVGD DAYLDGDDLK QILAADIKQN NISGESSAAE KDVEEGIETG 240 MPSKQLEHDN DATSSKEASS KFGSGYQYPF MKQASQMLGS FPAPPAFASE FPSKDVALRL 300 NSASQPSSSV HVTAGMIRIR NMSMDGHGTT DWFLGKHSQY NVTLSFGVSG GDDNSTTLES 360 AVGILPGKAV SPTPIGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-49 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022006101.1 | 1e-131 | NAC domain-containing protein 53-like | ||||
Swissprot | Q84K00 | 1e-106 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A251SKL1 | 1e-130 | A0A251SKL1_HELAN; Putative NAC domain containing protein 53 | ||||
STRING | Migut.F01687.1.p | 1e-126 | (Erythranthe guttata) |