PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21223_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 367aa    MW: 41673 Da    PI: 4.8205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21223_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.77.4e-13101203128
                                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                            Gf+F+P+d el+  yL++k++g++l++e  i+e+d+y v +P +L k +k e+  +y F+k +k        
  cra_locus_21223_iso_1_len_1328_ver_3  10 LGFKFKPNDIELL-IYLRQKANGEPLPCEGLIPEIDLYGVdDPGKLFKGIK-ENALVYVFTKLKKL------G 74 
                                           59***********.9*************999*******9978****75553.34566999988664......4 PP

                                   NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                           nr+     Wk     k+++++kg ++g kk++v+ ++ +    +    m+e++l
  cra_locus_21223_iso_1_len_1328_ver_3  75 NRT-----WKGVDGVKAIYDSKGCVIGEKKSFVLINKMK---MRIGYNMKEFSL 120
                                           675.....**************************94333...468888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-168138IPR003441NAC domain
PROSITE profilePS5100513.6918138IPR003441NAC domain
PfamPF023651.6E-711120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGNARYPAGL GFKFKPNDIE LLIYLRQKAN GEPLPCEGLI PEIDLYGVDD PGKLFKGIKE  60
NALVYVFTKL KKLGNRTWKG VDGVKAIYDS KGCVIGEKKS FVLINKMKMR IGYNMKEFSL  120
AKDSSRFCDY VLCQIKKKGY KPRSLKYGGN CPEEDLCYDS VSIPEIGLPH SEGYECNDDG  180
SKIVVGLGQS QQSWSSLVPP PPMLFGGFYS AQEFGYRGVD SSMNLNGIEE FHQXXXXXXX  240
XXXXXXXXXX XXXXGGFDSN EDLMGWGFFE PWVQELSQDQ EEQSKEFSVS QHMITQCQQQ  300
FSDSKEGMSY KPLMSSKFFE PSTETYLHNG EDNSWWMKDH KMVADFGENF VGEERDEFGV  360
LEMIKGL