PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_2093_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 288aa MW: 33002.4 Da PI: 9.8911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2093_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.7	1.4e-29	60	114	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+qLGG+++AtPk il++m++ gLt+ hvkSHLQkYR+ cra_locus_2093_iso_4_len_1109_ver_3 60 KERLKWTQELHSLFEKAVNQLGGPDRATPKGILKAMGISGLTIFHVKSHLQKYRM 114 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.567	57	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-27	59	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-16	59	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-23	60	115	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-9	62	113	IPR001005	SANT/Myb domain
Pfam	PF14379	6.1E-18	147	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0042393	Molecular Function	histone binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
XSTQLNSTQM PIAYLTFSLQ QVYMCCSHLQ KKLPQIFHST GRVRRSRGCS MGSSRSDGSK 60 ERLKWTQELH SLFEKAVNQL GGPDRATPKG ILKAMGISGL TIFHVKSHLQ KYRMSKFIPE 120 SPHRGSRFER RSISEMLPNF SATSGAQLNE ALQMQLEVQR RLSDQFEVQR SLKMKIEAQG 180 RFLERIAEEC KNRSANAKPS KPYSPVSLPS LCEESDSEID RHEIRCTEEF RAPKRIRIED 240 DFMQQKYNNH NMLLQKGLNS PCWANDIGFP WNFAAQSPLL PALYDSLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	60	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	60	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	60	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	60	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	60	117	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027069043.1	1e-137	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	5e-53	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A068UDA6	1e-136	A0A068UDA6_COFCA; Uncharacterized protein
STRING	XP_006481047.1	2e-98	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26