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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2030_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 96aa MW: 9987.08 Da PI: 11.0286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 69 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H cra_locus_2030_iso_7_len_633_ver_3 69 HTCKSCSRSFGSENALESHKKAkH 92 79*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.69E-5 | 61 | 91 | No hit | No description |
Pfam | PF13912 | 6.1E-7 | 69 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.3 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTDLKKGGVH IATPHPSKQA GKTPGNKNQQ 60 TPKSGGGSHT CKSCSRSFGS ENALESHKKA KHSGGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027072210.1 | 1e-41 | histone deacetylase HDT1-like isoform X1 | ||||
Refseq | XP_027072211.1 | 1e-41 | histone deacetylase HDT1-like isoform X2 | ||||
Swissprot | Q6V9I6 | 5e-31 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A0A068V467 | 9e-41 | A0A068V467_COFCA; Uncharacterized protein | ||||
STRING | XP_009612087.1 | 9e-41 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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