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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2030_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 144aa MW: 15609.2 Da PI: 10.6157 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 117 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H cra_locus_2030_iso_5_len_776_ver_3 117 HTCKSCSRSFGSENALESHKKAkH 140 79*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.05E-5 | 109 | 139 | No hit | No description |
PROSITE profile | PS50157 | 12.3 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-6 | 117 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 119 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTGEFPYYTX LDNFPDFYLL VRRGKVTCFX 60 ACRVLFTSFL IGLLMYLNIA DLKKGGVHIA TPHPSKQAGK TPGNKNQQTP KSGGGSHTCK 120 SCSRSFGSEN ALESHKKAKH SGGK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027072210.1 | 7e-33 | histone deacetylase HDT1-like isoform X1 | ||||
TrEMBL | A0A068V467 | 7e-32 | A0A068V467_COFCA; Uncharacterized protein | ||||
STRING | XP_009612087.1 | 6e-32 | (Nicotiana tomentosiformis) |