PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_20299_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 350aa MW: 37813.5 Da PI: 8.4392 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 112.3 | 2.5e-35 | 69 | 126 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee cra_locus_20299_iso_2_len_1835_ver_3 69 VVTYKECLKNHAASLGGHAVDGCGEFMPSPSSTpTDPTSLKCAACGCHRNFHRREPEE 126 689*****************************99*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.3E-30 | 70 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-18 | 70 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.4E-32 | 71 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.541 | 72 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.75E-19 | 209 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-29 | 214 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-24 | 221 | 278 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDITSATTTT TTVKTPEAET ETPTRIQPTT TKALSFSNGV LKRHTPLHHH HGFNNHHHQH 60 HHHPAAAAVV TYKECLKNHA ASLGGHAVDG CGEFMPSPSS TPTDPTSLKC AACGCHRNFH 120 RREPEESLPH PNTTAALEYQ PHHRHHPPPP PPPPPTAHRN SGGHSSPSSP SPPPISSSYY 180 PSAPHMLLAL SAGLSGPPQD GNLPTGTTSG GAGFSNTPNG RKRFRTKFSQ DQKDRMLEFA 240 ERVGWKMQKR DEELIGEFCN EIGVDKGVLK VWMHNNKNTF GKRDQANITP SSSSNPGAAA 300 TNNGNGINFD TQYHHHNHQQ QNHDNKMHSS DSISGHHVAA AATNGSSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 222 | 279 | 18 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075059.1 | 1e-120 | zinc-finger homeodomain protein 9-like | ||||
Refseq | XP_027151497.1 | 1e-120 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 2e-73 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A068U1S4 | 1e-121 | A0A068U1S4_COFCA; Uncharacterized protein | ||||
STRING | XP_009620291.1 | 1e-112 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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