PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20299_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ZF-HD
Protein Properties Length: 350aa    MW: 37813.5 Da    PI: 8.4392
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20299_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.32.5e-3569126359
                           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                            v+YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  cra_locus_20299_iso_1_len_1837_ver_3  69 VVTYKECLKNHAASLGGHAVDGCGEFMPSPSSTpTDPTSLKCAACGCHRNFHRREPEE 126
                                           689*****************************99*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.3E-3070124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1870126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-3271123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.54172123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.75E-19209282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-29214282IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-24221278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDITSATTTT TTVKTPEAET ETPTRIQPTT TKALSFSNGV LKRHTPLHHH HGFNNHHHQH  60
HHHPAAAAVV TYKECLKNHA ASLGGHAVDG CGEFMPSPSS TPTDPTSLKC AACGCHRNFH  120
RREPEESLPH PNTTAALEYQ PHHRHHPPPP PPPPPTAHRN SGGHSSPSSP SPPPISSSYY  180
PSAPHMLLAL SAGLSGPPQD GNLPTGTTSG GAGFSNTPNG RKRFRTKFSQ DQKDRMLEFA  240
ERVGWKMQKR DEELIGEFCN EIGVDKGVLK VWMHNNKNTF GKRDQANITP SSSSNPGAAA  300
TNNGNGINFD TQYHHHNHQQ QNHDNKMHSS DSISGHHVAA AATNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202222791875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075059.11e-120zinc-finger homeodomain protein 9-like
RefseqXP_027151497.11e-120zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-73ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A068U1S41e-121A0A068U1S4_COFCA; Uncharacterized protein
STRINGXP_009620291.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]