PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_19580_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 402aa MW: 44338 Da PI: 8.0867

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19580_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2e-30	184	243	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ cra_locus_19580_iso_2_len_1295_ver_3 184 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 243 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.9E-33	169	245	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-28	177	245	IPR003657	WRKY domain
PROSITE profile	PS50811	29.184	179	245	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	184	244	IPR003657	WRKY domain
Pfam	PF03106	2.9E-27	185	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
ATEEADHQKK SSQELSVLQM EMSRMKEENK VLRKAVEETM KDYHDLQIKF ASHVQQNSLT 60 CYKDDPKSFL WLINGNGRDR LRPSQQDTKS RRILPPTPEA NSQDQDQDKD NNDSKGNDQL 120 GLSLTLQSSS SSMSKKDGEE DASDEGLQNK LQMKSIMNHA AASASPPNRK ARVSVRARCE 180 TATMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH 240 NHPLPVGATA MASTATATAP PPPAASFMLL DSSNYGISNF NLHQSPLLFP YHNNNNSPIS 300 SYPNSSNKGD IVLDLTNSNH APPHHHTQQF PSSSSSNSWN NNNNNNIDEG NHNNSNKLLL 360 GAENVGAITS DPKFRVAVAA AISSLINNNN KKENYQNGTP TS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

ATEEADHQKK SSQELSVLQM EMSRMKEENK VLRKAVEETM KDYHDLQIKF ASHVQQNSLT  60
CYKDDPKSFL WLINGNGRDR LRPSQQDTKS RRILPPTPEA NSQDQDQDKD NNDSKGNDQL  120
GLSLTLQSSS SSMSKKDGEE DASDEGLQNK LQMKSIMNHA AASASPPNRK ARVSVRARCE  180
TATMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH  240
NHPLPVGATA MASTATATAP PPPAASFMLL DSSNYGISNF NLHQSPLLFP YHNNNNSPIS  300
SYPNSSNKGD IVLDLTNSNH APPHHHTQQF PSSSSSNSWN NNNNNNIDEG NHNNSNKLLL  360
GAENVGAITS DPKFRVAVAA AISSLINNNN KKENYQNGTP TS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	171	247	1	76	WRKY transcription factor 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028081368.1	1e-109	probable WRKY transcription factor 9 isoform X1
TrEMBL	A0A068LIA8	1e-110	A0A068LIA8_GOSHI; WRKY transcription factor 81
STRING	EOX97400	1e-106	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7287	21	29