PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19330_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 210aa    MW: 22728.1 Da    PI: 6.1349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19330_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.11.3e-11189209222
                                           --SS-EEEEEEE--TT-SS-E CS
                                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                           +Dgy+WrKYGqK vk+s+fpr
  cra_locus_19330_iso_4_len_1499_ver_3 189 EDGYRWRKYGQKAVKNSPFPR 209
                                           8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-12173209IPR003657WRKY domain
SuperFamilySSF1182901.57E-9180209IPR003657WRKY domain
PROSITE profilePS5081113.586183210IPR003657WRKY domain
SMARTSM007740.0046188210IPR003657WRKY domain
PfamPF031061.8E-7189209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEMKRAVLKM EDPIPSLFSD DYFTLISSNP SSSSSASFMD YTANEGGFME LLQGVHDFGS  60
LSSSSSGWFE EAAPSSNYQV WTQPAKVEAP LNYEAAVATT AAAADSAAAP ATPCSNSSSI  120
SSDSCGGALN DDLSKPPAAA AAAEEEEKHK TNKHLKAKKG STTGNEKKKK REREARFAFM  180
TKSDVDHLED GYRWRKYGQK AVKNSPFPRY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo