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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_19330_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35332.4 Da PI: 7.6242 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.2 | 3.9e-34 | 189 | 246 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+ver+ +dp++v++tYeg+Hnh+ cra_locus_19330_iso_2_len_1364_ver_3 189 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCLNDPSLVITTYEGQHNHQ 246 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-36 | 173 | 248 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-30 | 180 | 248 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.973 | 183 | 248 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-40 | 188 | 247 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 189 | 246 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEMKRAVLKM EDPIPSLFSD DYFTLISSNP SSSSSASFMD YTANEGGFME LLQGVHDFGS 60 LSSSSSGWFE EAAPSSNYQV WTQPAKVEAP LNYEAAVATT AAAADSAAAP ATPCSNSSSI 120 SSDSCGGALN DDLSKPPAAA AAAEEEEKHK TNKHLKAKKG STTGNEKKKK REREARFAFM 180 TKSDVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTSASCN VKKRVERCLN DPSLVITTYE 240 GQHNHQTPLL QHRHRHSSPS PLHLLPPFMH SDQLTPPFNY CVSSRIPTNT NPNLVLPPAG 300 SLLRDDGLLQ DIIPHATIIR NN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-28 | 178 | 248 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-28 | 178 | 248 | 7 | 77 | Probable WRKY transcription factor 4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010259241.1 | 2e-53 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |