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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_19292_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 518aa MW: 57765.9 Da PI: 5.8981 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 296.4 | 7.3e-91 | 158 | 518 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 v+ L++ Ae++++++l+l++ +L rl+++ +sp+g+++qR+a+yf+eAL++ l++ ++ ++++ s+ + cra_locus_19292_iso_2_len_1730_ver_3 158 VDELIRLAECFETNSLHLTHVILGRLNQRlRSPTGKALQRAAFYFKEALQSLLTG------STRSTRPLSSPD 224 678*************************99*************************......666777777778 PP GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppsl 142 ++++++a+k+fs++sPi+ fs +taNqa+leaveg+ vH+iDf+i+ G++W+++l++La+++ +pp l cra_locus_19292_iso_2_len_1730_ver_3 225 VIQSIKAHKAFSNISPIPMFSSFTANQAVLEAVEGAVLVHVIDFEIGLGGHWASFLKELADKAecrkVNPPVL 297 ************************************************************877665588**** PP GRAS 143 RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215 RiT+v+ +e + e + ++e+La+fA+el++ fe+++++ +++e l+++++++ +gE++aV l+ ++r + cra_locus_19292_iso_2_len_1730_ver_3 298 RITAVVGEE--YAMESKLIRENLAQFARELNIGFEIDFVLIRTFEFLSFKSIKFMEGEKIAVLLSPTIFRRV- 367 *******66..999999***************************************************9998. PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak......lprese 280 + +L+ ++++sP+vvv v++e + ++++F + +++ le++s+l++slea + ++ cra_locus_19292_iso_2_len_1730_ver_3 368 -----G---SGFLNDLRRISPHVVVNVDNEglVGFGTTTFRQTVINGLEFFSTLMESLEAAngggggGGGGDD 432 .....3...48*******************65566***********************77745555545566* PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 +++k+E+++l ++i ++v ++g++ Wre++ aG++pv ls++a qa+ l+r+v+++g++v cra_locus_19292_iso_2_len_1730_ver_3 433 WMRKIENFVLFPKILEAVGAAGRR-------GTPWREAFVGAGLRPVGLSQFADFQADGLIRRVQVRGFHVGR 498 **********************98.......789*************************************** PP GRAS 354 esgslvlgWkdrpLvsvSaW 373 ++++++l+W++r+Lv++SaW cra_locus_19292_iso_2_len_1730_ver_3 499 RQAEMLLCWQERALVATSAW 518 ******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.52 | 131 | 499 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-88 | 158 | 518 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
XPSPVTDHHH HHLKPPPNSS PINTTTTVWE DHHQPIIDQH PAEEEEDQDH VLNNDFNWDS 60 LMREFGLHED NSNLKPISQL VQTDSPQTQY LTLPEFPIVH QSFDNSSQLI LPPPNDLFLT 120 DTSSPYGGGV FDNLTGSDAR HMTNNNWNNN NNIGFDYVDE LIRLAECFET NSLHLTHVIL 180 GRLNQRLRSP TGKALQRAAF YFKEALQSLL TGSTRSTRPL SSPDVIQSIK AHKAFSNISP 240 IPMFSSFTAN QAVLEAVEGA VLVHVIDFEI GLGGHWASFL KELADKAECR KVNPPVLRIT 300 AVVGEEYAME SKLIRENLAQ FARELNIGFE IDFVLIRTFE FLSFKSIKFM EGEKIAVLLS 360 PTIFRRVGSG FLNDLRRISP HVVVNVDNEG LVGFGTTTFR QTVINGLEFF STLMESLEAA 420 NGGGGGGGGG DDWMRKIENF VLFPKILEAV GAAGRRGTPW REAFVGAGLR PVGLSQFADF 480 QADGLIRRVQ VRGFHVGRRQ AEMLLCWQER ALVATSAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-23 | 163 | 518 | 25 | 378 | Protein SCARECROW |
5b3h_A | 6e-23 | 163 | 518 | 24 | 377 | Protein SCARECROW |
5b3h_D | 6e-23 | 163 | 518 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075597.1 | 0.0 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-133 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A068U5B9 | 0.0 | A0A068U5B9_COFCA; Uncharacterized protein | ||||
STRING | XP_009803270.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8305 | 22 | 30 |
Publications ? help Back to Top | |||
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