PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_19150_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GATA

Protein Properties

Length: 385aa MW: 42001.4 Da PI: 6.4343

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19150_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.8	5.4e-12	319	342	1	24
GATA 1 CsnCgttkTplWRrgpdgnktLCn 24 Cs+Cg+ kTp+WR gp g ktLCn cra_locus_19150_iso_1_len_1419_ver_3 319 CSHCGVQKTPQWRAGPMGAKTLCN 342 ***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	8.08E-8	313	342	No hit	No description
SMART	SM00401	8.3E-5	313	370	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.8E-9	317	342	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.03E-8	318	342	No hit	No description
Pfam	PF00320	1.0E-9	319	342	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
XFSFLFLSFH SMLYRTHHHP FLFPLNPFTP TPLSSSHPHP TSSPLLSSSS YSSLSQVVEK 60 GMDRVEEVAL KSSFGPDLPP KTATYLHQQP QQQVFSDDCS AGNGQNAVLG DDFFVDDLLD 120 FSNAVVEDPE EQKQEELLEN DVTTVTQAAS VVTSATFSVK DDDFGSLPAS ELTVPSDDLE 180 SLEWLSHFVD DSFPEYSLTY PVTKLPPMPA KSKTDPEVLV QKKPNCFATP VQTKARSKRT 240 RAGVPGWSFG SCSLTESSTS STTSSSSSTT TSSSPCHPWL FYSGPGQTAE SLFGKPQGKK 300 QKKRPAMESS GGGQQPRRCS HCGVQKTPQW RAGPMGAKTL CNXMWGPFQV GSATSGIPNH 360 RKVLEMRRKK EMEEAGLAAP PVQSF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

XFSFLFLSFH SMLYRTHHHP FLFPLNPFTP TPLSSSHPHP TSSPLLSSSS YSSLSQVVEK  60
GMDRVEEVAL KSSFGPDLPP KTATYLHQQP QQQVFSDDCS AGNGQNAVLG DDFFVDDLLD  120
FSNAVVEDPE EQKQEELLEN DVTTVTQAAS VVTSATFSVK DDDFGSLPAS ELTVPSDDLE  180
SLEWLSHFVD DSFPEYSLTY PVTKLPPMPA KSKTDPEVLV QKKPNCFATP VQTKARSKRT  240
RAGVPGWSFG SCSLTESSTS STTSSSSSTT TSSSPCHPWL FYSGPGQTAE SLFGKPQGKK  300
QKKRPAMESS GGGQQPRRCS HCGVQKTPQW RAGPMGAKTL CNXMWGPFQV GSATSGIPNH  360
RKVLEMRRKK EMEEAGLAAP PVQSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076482.1	5e-96	GATA transcription factor 5-like
TrEMBL	A0A068U185	3e-93	A0A068U185_COFCA; GATA transcription factor
STRING	XP_009761911.1	5e-85	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1154	24	81