 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_19122_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
NAC |
| Protein Properties |
Length: 196aa MW: 22562.1 Da PI: 4.5592 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_19122_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 120.1 | 2.1e-37 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74
lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyf+s+r +
cra_locus_19122_iso_1_len_871_ver_3 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMVEGNKWYFYSRRTQ-------- 72
79*************************999.99**************977777899******9854........ PP
NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+r+t +gyW+ g +++++s +g++vg+kk vfy g+ ++g kt+W+m+eyrl
cra_locus_19122_iso_1_len_871_ver_3 73 SRITGNGYWQPLGVEEPIFSMtSGQKVGMKKFYVFYIGEPQEGAKTNWIMQEYRL 127
799****************9878999***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010089 | Biological Process | xylem development |
| GO:0043067 | Biological Process | regulation of programmed cell death |
| GO:0048367 | Biological Process | shoot system development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MGDDNVKLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMVE 60
GNKWYFYSRR TQSRITGNGY WQPLGVEEPI FSMTSGQKVG MKKFYVFYIG EPQEGAKTNW 120
IMQEYRLSSD SGSTSSSSSS SRSSKKRHSK LDYSKWVVCR VYERNNDDDD DDGTELSCLD 180
EVFLSLDDLE EISLPN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-40 | 5 | 166 | 14 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-40 | 5 | 166 | 14 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
