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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_19122_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 22562.1 Da PI: 4.5592 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.1 | 2.1e-37 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyf+s+r + cra_locus_19122_iso_1_len_871_ver_3 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMVEGNKWYFYSRRTQ-------- 72 79*************************999.99**************977777899******9854........ PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+t +gyW+ g +++++s +g++vg+kk vfy g+ ++g kt+W+m+eyrl cra_locus_19122_iso_1_len_871_ver_3 73 SRITGNGYWQPLGVEEPIFSMtSGQKVGMKKFYVFYIGEPQEGAKTNWIMQEYRL 127 799****************9878999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-48 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.369 | 8 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGDDNVKLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMVE 60 GNKWYFYSRR TQSRITGNGY WQPLGVEEPI FSMTSGQKVG MKKFYVFYIG EPQEGAKTNW 120 IMQEYRLSSD SGSTSSSSSS SRSSKKRHSK LDYSKWVVCR VYERNNDDDD DDGTELSCLD 180 EVFLSLDDLE EISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-40 | 5 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-40 | 5 | 166 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-40 | 5 | 166 | 14 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106335.1 | 1e-113 | NAC domain-containing protein 104-like | ||||
Refseq | XP_027159802.1 | 1e-113 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 2e-86 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A068TMB6 | 1e-111 | A0A068TMB6_COFCA; Uncharacterized protein | ||||
STRING | XP_009762857.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Publications ? help Back to Top | |||
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