PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1901_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 29877.2 Da PI: 4.425 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k cra_locus_1901_iso_3_len_1063_ver_3 77 KKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYK 130 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.8e-41 | 76 | 164 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 ekkrrl+++qv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEk+y++Lk+++d+l+ cra_locus_1901_iso_3_len_1063_ver_3 76 EKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKEYDSLKSSFDKLN 149 69************************************************************************ PP HD-ZIP_I/II 75 eenerLekeveeLre 89 ++ ++L ke+e+L++ cra_locus_1901_iso_3_len_1063_ver_3 150 ADYDSLFKENEKLKN 164 *************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-19 | 63 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 72 | 132 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-19 | 75 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.26E-17 | 77 | 133 | No hit | No description |
Pfam | PF00046 | 8.4E-17 | 77 | 130 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-20 | 78 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-6 | 103 | 112 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 107 | 130 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-6 | 112 | 128 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.4E-12 | 132 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
XLQDERLPSS CSSLEVLDSL WISNSSPPPP PFHASRMVNF SEAEGENSRK REKSFFPQEE 60 ENSGNENFDG YFHHPEKKRR LTADQVQFLE KSFEVENKLE PERKVQLAKE LGLQPRQVAI 120 WFQNRRARYK TKQLEKEYDS LKSSFDKLNA DYDSLFKENE KLKNVXLPGI KQEDAASSAK 180 SDVFDSDSPH CTDGNHSSNV FEAELSDFSQ DEDDNLSISL LQPSLCFPKL EDECYDELQP 240 NSSNLGFSIE DQASWFWSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | RRARYKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027100798.1 | 1e-116 | homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_027153110.1 | 1e-116 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A1DR77 | 1e-122 | A1DR77_CATRO; DNA-binding protein | ||||
STRING | XP_009766848.1 | 3e-94 | (Nicotiana sylvestris) |