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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18789_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 17235.8 Da PI: 10.4207 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 5.9e-30 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s cra_locus_18789_iso_8_len_1410_ver_3 2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.202 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-31 | 2 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-30 | 2 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.93E-39 | 2 | 71 | No hit | No description |
Pfam | PF00319 | 8.2E-27 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-17 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-17 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE 60 RYKKMKEEHQ QHLLNPSSEI KKMKSSTHIF GVPCARELLI MTLIPLKDSS FSRQAGYQWA 120 KECCKLKKPS DRGQFSRPQG SIYEEYKQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-19 | 3 | 70 | 10 | 77 | MEF2C |
5f28_B | 6e-19 | 3 | 70 | 10 | 77 | MEF2C |
5f28_C | 6e-19 | 3 | 70 | 10 | 77 | MEF2C |
5f28_D | 6e-19 | 3 | 70 | 10 | 77 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021283893.1 | 9e-41 | MADS-box transcription factor 27-like | ||||
Swissprot | Q9SZJ6 | 5e-35 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A2G9HJJ1 | 8e-39 | A0A2G9HJJ1_9LAMI; MADS box transcription factor | ||||
STRING | EOY15523 | 1e-39 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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