PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ZF-HD

Protein Properties

Length: 277aa MW: 29455.6 Da PI: 8.3973

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18778_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.8	2e-31	90	143	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhAas+Gg+++DGCgEfmps geegt +a+kCaAC+CHRnFHR+e++ cra_locus_18778_iso_1_len_1586_ver_3 90 IRYRECLKNHAASTGGNVTDGCGEFMPS-GEEGTLEAFKCAACNCHRNFHRKESN 143 79***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-22	85	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-29	90	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.9E-29	91	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.417	92	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.45E-12	214	277	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-23	225	277	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.3E-23	226	277	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MALTGEDKEM RMPAGSLGYE SLENLDQHTQ GHHHQQQQQQ HEHLLNIQQE KSRGGGGGGG 60 NGFNSGGGGG GGGGSKSRTP TGRNSATNII RYRECLKNHA ASTGGNVTDG CGEFMPSGEE 120 GTLEAFKCAA CNCHRNFHRK ESNGGGGGGG GGGEGAIMLH PLHLPSAAAI PSPSWTTTMV 180 QPVKMAFRGG GGGSASAGTD SSSEELNFNT YHSTSIPPPP QFVLAKKRFR TKFSQEQKDK 240 MLAFAEKLGW RIPREDDTEV QRFCAEVGVK RQVFKVW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-21	227	277	18	68	ZF-HD homeobox family protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	74	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092987.1	1e-119	zinc-finger homeodomain protein 2-like
Refseq	XP_027148800.1	1e-119	zinc-finger homeodomain protein 2-like
Swissprot	Q9M9S0	1e-52	ZHD4_ARATH; Zinc-finger homeodomain protein 4
Swissprot	Q9ZPW7	7e-53	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A068UH15	1e-115	A0A068UH15_COFCA; Uncharacterized protein
STRING	XP_009763792.1	5e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128