PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_18737_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 208aa MW: 23567.5 Da PI: 4.484

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18737_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	171	196	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 ++ErrRR+r+N++++ Lr+++Pk + cra_locus_18737_iso_1_len_623_ver_3 171 LMAERRRRKRLNDRLSMLRSIVPKiS 196 589********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.439	165	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-8	167	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	171	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	172	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
XELTTENGIL EELLVASKGD NWTTLLGGSN GGNELYEIFP NGWNYESCFD QNQEDLTLTS 60 SNFSSLLGYN NNTSISQSFA FPFGEPYPFS DGNFTIPEFD YNDMPQEAGI QVQEEYDHEG 120 IHLQENGQLF GLVGNGLEQL EQQHVNSRTD AFTEKKSSKV KKVEGQPSKN LMAERRRRKR 180 LNDRLSMLRS IVPKISKFXQ MDRTSILG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	180	ERRRRKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083232.1	9e-35	transcription factor bHLH61-like
Refseq	XP_027178936.1	9e-35	transcription factor bHLH61
TrEMBL	A0A068U2H5	3e-33	A0A068U2H5_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97