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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18519_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 42064.1 Da PI: 7.2213 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 ++pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r cra_locus_18519_iso_1_len_1241_ver_3 14 MMPGFRFHPTDEELVGFYLKRKIQQRPLPI-ELIKQVDIYKYDPWDLPKVASTGEKEWYFYCPRDRKYRNSAR 85 579***************************.89***************9888999****************** PP NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl cra_locus_18519_iso_1_len_1241_ver_3 86 PNRVTGAGFWKATGTDRPIYSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 *********************956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-59 | 14 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.658 | 14 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDEKNDGDKI DDVMMPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP 60 KVASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPTSDSPPPK KLLDKGLPPH DAWAICRIFK KTNSMAQRAL 180 SHAWISSSPF SEPSLPEIFP QYSQFSSENI SCTTETGSNL HLCSNKNDLN PTSTPTFSPL 240 NSMVSKPSFC WANPNGDFPP NFMFSPPTFD VSSMIFNPSP VLIPGGDGNN NNNNKVPENI 300 EFESSNQPQH HHFNSFSSPE IQERTIEFPF NLPTTSIGGG GDDWKSHLSW DSPGNCNSEI 360 STTYSSPNKC YT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-52 | 16 | 174 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-52 | 16 | 174 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-52 | 16 | 174 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-52 | 16 | 174 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-52 | 16 | 174 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 7e-52 | 16 | 174 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 7e-52 | 16 | 174 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027154409.1 | 1e-161 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-102 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1S3XUN7 | 1e-159 | A0A1S3XUN7_TOBAC; putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A1S4CAZ4 | 1e-159 | A0A1S4CAZ4_TOBAC; putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A1U7XEB4 | 1e-159 | A0A1U7XEB4_NICSY; putative NAC domain-containing protein 94 | ||||
STRING | XP_009600694.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Publications ? help Back to Top | |||
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